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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
25.8
nTPM
Monaco:
85.7
nTPM
Schmiedel:
104.3
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
25.8
HPA sample
nTPM
gdT-cell nTPM: 9.2
Samples: 6
Max nTPM: 14.1
Min nTPM: 3.0
P10809_1007
6.9
P10809_1022
10.8
P10809_1041
14.1
P10809_1060
7.2
P10809_1077
13.2
P10809_1098
3.0
MAIT T-cell nTPM: 16.2
Samples: 6
Max nTPM: 25.4
Min nTPM: 9.9
P10809_1006
22.0
P10809_1024
12.5
P10809_1043
12.4
P10809_1062
25.4
P10809_1083
14.9
P10809_1097
9.9
Memory CD4 T-cell nTPM: 20.7
Samples: 6
Max nTPM: 33.6
Min nTPM: 15.1
P10809_1014
20.9
P10809_1026
33.6
P10809_1045
19.8
P10809_1064
15.1
P10809_1086
15.7
P10809_1113
19.3
Memory CD8 T-cell nTPM: 11.8
Samples: 5
Max nTPM: 15.7
Min nTPM: 4.9
P10809_1012
15.7
P10809_1027
4.9
P10809_1046
14.5
P10809_1065
8.1
P10809_1111
15.7
Naive CD4 T-cell nTPM: 18.2
Samples: 6
Max nTPM: 21.0
Min nTPM: 14.8
P10809_1015
14.8
P10809_1030
18.1
P10809_1049
18.2
P10809_1068
19.7
P10809_1085
17.5
P10809_1112
21.0
Naive CD8 T-cell nTPM: 13.6
Samples: 6
Max nTPM: 20.1
Min nTPM: 7.6
P10809_1016
17.6
P10809_1031
20.1
P10809_1050
9.7
P10809_1069
7.6
P10809_1087
8.1
P10809_1110
18.3
T-reg nTPM: 25.8
Samples: 6
Max nTPM: 29.3
Min nTPM: 17.5
P10809_1018
27.7
P10809_1037
17.5
P10809_1056
28.0
P10809_1075
27.3
P10809_1094
29.3
P10809_1106
24.8
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
85.7
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 80.1
Samples: 4
Max nTPM: 96.3
Min nTPM: 65.0
RHH5202_R3573
80.4
RHH5230_R3602
96.3
RHH5259_R3631
78.6
RHH5288_R3660
65.0
Effector memory CD8 T-cell nTPM: 71.2
Samples: 4
Max nTPM: 78.2
Min nTPM: 60.2
RHH5203_R3574
69.0
RHH5231_R3603
60.2
RHH5260_R3632
78.2
RHH5289_R3661
77.4
MAIT T-cell nTPM: 73.7
Samples: 4
Max nTPM: 82.4
Min nTPM: 68.5
RHH5233_R3605
82.4
RHH5205_R3576
72.5
RHH5262_R3634
71.4
RHH5297_R3663
68.5
Memory CD4 T-cell TFH nTPM: 85.7
Samples: 4
Max nTPM: 92.4
Min nTPM: 75.5
RHH5300_R3666
92.4
RHH5236_R3608
75.5
RHH5265_R3637
87.5
RHH5208_R3579
87.3
Memory CD4 T-cell Th1 nTPM: 72.9
Samples: 4
Max nTPM: 89.7
Min nTPM: 55.8
RHH5210_R3581
55.8
RHH5302_R3668
85.6
RHH5238_R3610
60.5
RHH5267_R3639
89.7
Memory CD4 T-cell Th1/Th17 nTPM: 71.1
Samples: 4
Max nTPM: 76.8
Min nTPM: 64.8
RHH5303_R3669
64.8
RHH5211_R3582
76.1
RHH5239_R3611
66.7
RHH5268_R3640
76.8
Memory CD4 T-cell Th17 nTPM: 74.6
Samples: 4
Max nTPM: 106.1
Min nTPM: 59.6
RHH5304_R3670
67.1
RHH5212_R3583
65.6
RHH5240_R3612
106.1
RHH5269_R3641
59.6
Memory CD4 T-cell Th2 nTPM: 84.5
Samples: 4
Max nTPM: 96.7
Min nTPM: 68.0
RHH5305_R3671
68.0
RHH5213_R3584
96.7
RHH5241_R3613
84.9
RHH5270_R3642
88.3
Naive CD4 T-cell nTPM: 74.1
Samples: 4
Max nTPM: 76.9
Min nTPM: 71.3
RHH5306_R3672
74.4
RHH5214_R3585
76.9
RHH5242_R3614
71.3
RHH5271_R3643
73.9
Naive CD8 T-cell nTPM: 68.8
Samples: 4
Max nTPM: 86.1
Min nTPM: 41.9
RHH5201_R3572
86.1
RHH5229_R3601
41.9
RHH5258_R3630
85.6
RHH5287_R3659
61.6
Non-Vd2 gdTCR nTPM: 51.3
Samples: 4
Max nTPM: 63.0
Min nTPM: 44.6
RHH5235_R3607
51.8
RHH5264_R3636
44.6
RHH5207_R3578
45.8
RHH5299_R3665
63.0
T-reg nTPM: 76.8
Samples: 4
Max nTPM: 88.3
Min nTPM: 66.5
RHH5301_R3667
80.1
RHH5237_R3609
88.3
RHH5266_R3638
72.2
RHH5209_R3580
66.5
Terminal effector memory CD4 T-cell nTPM: 46.8
Samples: 2
Max nTPM: 51.0
Min nTPM: 42.5
RHH5243_R3615
42.5
RHH5272_R3644
51.0
Terminal effector memory CD8 T-cell nTPM: 64.2
Samples: 4
Max nTPM: 69.7
Min nTPM: 57.4
RHH5232_R3604
69.2
RHH5204_R3575
57.4
RHH5261_R3633
60.6
RHH5296_R3662
69.7
Vd2 gdTCR nTPM: 67.7
Samples: 4
Max nTPM: 117.6
Min nTPM: 41.3
RHH5234_R3606
117.6
RHH5206_R3577
48.7
RHH5263_R3635
41.3
RHH5298_R3664
63.0
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
