MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.3 nTPM
HPA Brain:49.8 nTPM
GTEx:35.3 nTPM
FANTOM5:50.3 Scaled Tags Per Million
Pig:84.4 nTPM
Mouse:87.6 nTPM
Allen mouse:10.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 49.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.2
2019 Male, age 18, unknown 65.2
2666 Male, age 74, left hemisphere 45.9
2411 Female, age 72, unknown 43.3
2828 Female, age 72, unknown 43.3
1827 Male, age 72, unknown 43.0
2586 Male, age 75, left hemisphere 41.5
1833 Male, age 53, unknown 40.7
1830 Male, age 51, unknown 37.9
1870 Female, age 42, unknown 36.2
2219 Male, age 76, both hemispheres 34.7
Dorsal raphe nucleus
nTPM: 42.8
2298 Female, age 72, unknown 51.2
1828 Male, age 53, unknown 50.2
2047 Male, age 72, unknown 40.7
2750 Male, age 76, both hemispheres 38.0
2016 Female, age 72, unknown 34.1
Inferior colliculus
nTPM: 43.6
1890 Male, age 53, unknown 47.6
2097 Female, age 72, unknown 46.5
1848 Female, age 42, unknown 43.8
2849 Male, age 72, unknown 36.6
Median raphe nucleus
nTPM: 38.7
2220 Male, age 76, midline 38.7
Periaquaductal grey, anterior
nTPM: 39.3
1795 Male, age 51, unknown 42.5
1947 Male, age 18, unknown 38.2
2502 Female, age 75, unknown 37.2
Periaquaductal grey, dorsal
nTPM: 37.9
2850 Male, age 76, both hemispheres 49.5
1831 Male, age 72, unknown 38.3
2464 Female, age 72, unknown 33.6
1840 Male, age 53, unknown 30.3
Periaquaductal grey, lateral
nTPM: 46.3
2272 Male, age 74, both hemispheres 69.3
2140 Male, age 76, both hemispheres 37.7
2053 Male, age 18, unknown 32.0
Pretectal area
nTPM: 49.8
1817 Female, age 42, unknown 67.8
2007 Male, age 72, unknown 61.0
1816 Male, age 51, unknown 59.6
2273 Male, age 74, both hemispheres 58.4
1944 Female, age 72, unknown 53.2
1815 Male, age 53, unknown 52.7
2667 Female, age 75, unknown 52.5
2407 Male, age 75, both hemispheres 40.8
2224 Female, age 72, unknown 38.2
2825 Male, age 18, unknown 32.3
2316 Male, age 76, right hemisphere 31.8
Red nucleus
nTPM: 46.5
2785 Male, age 18, unknown 60.8
1821 Female, age 72, unknown 55.4
1904 Male, age 53, unknown 50.8
1865 Male, age 51, unknown 48.2
2769 Male, age 72, unknown 47.3
1954 Female, age 42, unknown 47.0
2227 Male, age 72, unknown 46.5
2823 Male, age 76, right hemisphere 46.0
2725 Female, age 75, unknown 44.6
2503 Female, age 72, unknown 41.1
2588 Male, age 74, left hemisphere 37.8
2584 Male, age 75, left hemisphere 32.7
Substantia nigra
nTPM: 47.9
1916 Female, age 42, unknown 63.1
1889 Female, age 72, unknown 58.8
1851 Male, age 51, unknown 52.9
2665 Male, age 74, both hemispheres 48.2
1941 Male, age 53, unknown 45.9
2241 Male, age 72, unknown 43.6
2699 Male, age 18, unknown 43.3
2590 Female, age 75, unknown 42.3
2409 Female, age 72, unknown 42.0
2583 Male, age 75, right hemisphere 39.0
Superior colliculus
nTPM: 41.2
2087 Female, age 72, unknown 46.9
2587 Male, age 74, left hemisphere 46.6
1796 Male, age 53, unknown 46.2
2261 Male, age 18, unknown 46.0
2668 Female, age 75, unknown 45.7
1913 Female, age 42, unknown 40.2
1995 Male, age 72, unknown 40.1
1895 Male, age 76, right hemisphere 38.2
1839 Male, age 51, unknown 34.1
2664 Male, age 75, both hemispheres 27.9
Ventral tegmental area
nTPM: 44.5
2410 Female, age 72, unknown 57.1
2218 Male, age 76, both hemispheres 49.7
1915 Female, age 42, unknown 46.2
2223 Female, age 72, unknown 43.7
1942 Male, age 51, unknown 37.5
2021 Male, age 53, unknown 32.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.3
Samples: 139

Max nTPM: 53.5
Min nTPM: 19.1
Std nTPM: 7.4
Median nTPM: 34.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 53.5
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 51.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 51.7
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 51.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 50.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 50.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 49.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 49.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 49.2
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 48.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 48.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.3
FF:10158-103A5 76 years, female 50.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 84.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 68.2
Samples: 4

Max nTPM: 73.1
Min nTPM: 63.8
Sample A Female 70.1
Sample B Female 63.8
Sample C Male 73.1
Sample D Male 65.9
Midbrain
nTPM: 74.5
Samples: 4

Max nTPM: 101.9
Min nTPM: 55.4
Sample A Female 74.6
Sample B Female 55.4
Sample C Male 101.9
Sample D Male 66.2
Periaqueductal gray
nTPM: 51.5
Samples: 3

Max nTPM: 59.1
Min nTPM: 46.7
Sample B Female 48.7
Sample C Male 59.1
Sample D Male 46.7
Superior colliculi
nTPM: 84.4
Samples: 4

Max nTPM: 92.4
Min nTPM: 79.1
Sample A Female 84.9
Sample B Female 81.1
Sample C Male 92.4
Sample D Male 79.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 87.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 87.6
Samples: 4

Max nTPM: 92.3
Min nTPM: 84.1
Sample A Male 92.3
Sample B Male 84.1
Sample C Female 88.7
Sample D Female 85.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.9
512767 Antisense, RP_040809_02_D05, Mouse strain C57BL/6J (56 days, male) 10.9

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