MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.5 nTPM
HPA Brain:60.7 nTPM
GTEx:29.5 nTPM
FANTOM5:56.1 Scaled Tags Per Million
Pig:35.6 nTPM
Mouse:34.3 nTPM
Allen mouse:6.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 60.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.8
2019 Male, age 18, unknown 61.3
2586 Male, age 75, left hemisphere 59.2
1827 Male, age 72, unknown 59.0
2219 Male, age 76, both hemispheres 56.6
2828 Female, age 72, unknown 53.4
2411 Female, age 72, unknown 53.2
2666 Male, age 74, left hemisphere 50.7
1833 Male, age 53, unknown 49.8
1870 Female, age 42, unknown 47.8
1830 Male, age 51, unknown 47.3
Dorsal raphe nucleus
nTPM: 49.2
2298 Female, age 72, unknown 50.6
2750 Male, age 76, both hemispheres 50.2
1828 Male, age 53, unknown 49.9
2047 Male, age 72, unknown 49.8
2016 Female, age 72, unknown 45.6
Inferior colliculus
nTPM: 55.4
1890 Male, age 53, unknown 58.0
2097 Female, age 72, unknown 58.0
1848 Female, age 42, unknown 53.8
2849 Male, age 72, unknown 52.0
Median raphe nucleus
nTPM: 48.9
2220 Male, age 76, midline 48.9
Periaquaductal grey, anterior
nTPM: 53.7
1795 Male, age 51, unknown 55.0
2502 Female, age 75, unknown 54.2
1947 Male, age 18, unknown 52.0
Periaquaductal grey, dorsal
nTPM: 52.8
2464 Female, age 72, unknown 53.8
1831 Male, age 72, unknown 52.7
2850 Male, age 76, both hemispheres 52.5
1840 Male, age 53, unknown 52.1
Periaquaductal grey, lateral
nTPM: 54.0
2272 Male, age 74, both hemispheres 56.7
2140 Male, age 76, both hemispheres 56.1
2053 Male, age 18, unknown 49.4
Pretectal area
nTPM: 60.7
1816 Male, age 51, unknown 73.5
1944 Female, age 72, unknown 72.2
2007 Male, age 72, unknown 68.4
1817 Female, age 42, unknown 64.9
1815 Male, age 53, unknown 61.2
2407 Male, age 75, both hemispheres 59.4
2316 Male, age 76, right hemisphere 58.6
2273 Male, age 74, both hemispheres 55.3
2667 Female, age 75, unknown 54.3
2224 Female, age 72, unknown 51.3
2825 Male, age 18, unknown 49.1
Red nucleus
nTPM: 51.7
2785 Male, age 18, unknown 59.1
2588 Male, age 74, left hemisphere 55.9
2584 Male, age 75, left hemisphere 53.9
2725 Female, age 75, unknown 53.6
2823 Male, age 76, right hemisphere 52.2
1904 Male, age 53, unknown 51.9
1821 Female, age 72, unknown 50.3
1954 Female, age 42, unknown 48.8
2503 Female, age 72, unknown 48.8
2227 Male, age 72, unknown 48.7
1865 Male, age 51, unknown 48.5
2769 Male, age 72, unknown 48.2
Substantia nigra
nTPM: 56.1
1916 Female, age 42, unknown 61.2
2241 Male, age 72, unknown 59.5
1889 Female, age 72, unknown 59.2
1851 Male, age 51, unknown 58.6
1941 Male, age 53, unknown 58.1
2590 Female, age 75, unknown 57.4
2583 Male, age 75, right hemisphere 54.2
2699 Male, age 18, unknown 51.6
2665 Male, age 74, both hemispheres 50.6
2409 Female, age 72, unknown 50.4
Superior colliculus
nTPM: 55.6
2087 Female, age 72, unknown 65.8
2261 Male, age 18, unknown 63.4
2664 Male, age 75, both hemispheres 58.2
1895 Male, age 76, right hemisphere 57.3
2668 Female, age 75, unknown 57.1
1796 Male, age 53, unknown 56.2
1839 Male, age 51, unknown 50.7
1995 Male, age 72, unknown 49.6
1913 Female, age 42, unknown 49.3
2587 Male, age 74, left hemisphere 48.3
Ventral tegmental area
nTPM: 51.4
2218 Male, age 76, both hemispheres 55.0
2410 Female, age 72, unknown 55.0
1915 Female, age 42, unknown 53.2
1942 Male, age 51, unknown 51.5
2021 Male, age 53, unknown 48.9
2223 Female, age 72, unknown 44.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.5
Samples: 139

Max nTPM: 49.5
Min nTPM: 14.0
Std nTPM: 5.8
Median nTPM: 29.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 49.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 44.2
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 42.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 42.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 41.5
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 41.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 39.8
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 38.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 38.8
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 37.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 37.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.1
FF:10158-103A5 76 years, female 56.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 33.2
Samples: 4

Max nTPM: 35.0
Min nTPM: 29.9
Sample A Female 35.0
Sample B Female 29.9
Sample C Male 34.4
Sample D Male 33.6
Midbrain
nTPM: 35.7
Samples: 4

Max nTPM: 38.9
Min nTPM: 31.7
Sample A Female 38.9
Sample B Female 31.7
Sample C Male 33.2
Sample D Male 38.8
Periaqueductal gray
nTPM: 33.8
Samples: 3

Max nTPM: 35.4
Min nTPM: 31.9
Sample B Female 34.1
Sample C Male 35.4
Sample D Male 31.9
Superior colliculi
nTPM: 32.8
Samples: 4

Max nTPM: 34.2
Min nTPM: 29.8
Sample A Female 33.8
Sample B Female 29.8
Sample C Male 33.3
Sample D Male 34.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.3
Samples: 4

Max nTPM: 36.2
Min nTPM: 33.1
Sample A Male 33.1
Sample B Male 34.1
Sample C Female 36.2
Sample D Female 33.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.1
69549629 Antisense, RP_050301_01_E02, Mouse strain C57BL/6J (56 days, male) 6.1

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