MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:842.8 nTPM
HPA Brain:1019.2 nTPM
GTEx:842.8 nTPM
FANTOM5:691.6 Scaled Tags Per Million
Pig:610.2 nTPM
Mouse:272.8 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1019.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 681.2
2666 Male, age 74, left hemisphere 938.2
1830 Male, age 51, unknown 906.6
1833 Male, age 53, unknown 817.3
2019 Male, age 18, unknown 710.8
1870 Female, age 42, unknown 664.3
2586 Male, age 75, left hemisphere 656.3
2411 Female, age 72, unknown 639.1
2828 Female, age 72, unknown 582.7
2219 Male, age 76, both hemispheres 496.3
1827 Male, age 72, unknown 400.7
Dorsal raphe nucleus
nTPM: 421.4
2750 Male, age 76, both hemispheres 824.9
2016 Female, age 72, unknown 434.5
1828 Male, age 53, unknown 414.5
2047 Male, age 72, unknown 266.8
2298 Female, age 72, unknown 166.1
Inferior colliculus
nTPM: 396.3
2849 Male, age 72, unknown 461.1
1890 Male, age 53, unknown 450.4
1848 Female, age 42, unknown 413.1
2097 Female, age 72, unknown 260.6
Median raphe nucleus
nTPM: 457.2
2220 Male, age 76, midline 457.2
Periaquaductal grey, anterior
nTPM: 314.5
1947 Male, age 18, unknown 355.2
2502 Female, age 75, unknown 351.8
1795 Male, age 51, unknown 236.6
Periaquaductal grey, dorsal
nTPM: 237.2
2464 Female, age 72, unknown 425.6
1831 Male, age 72, unknown 248.9
1840 Male, age 53, unknown 137.6
2850 Male, age 76, both hemispheres 136.8
Periaquaductal grey, lateral
nTPM: 215.0
2053 Male, age 18, unknown 268.9
2272 Male, age 74, both hemispheres 250.5
2140 Male, age 76, both hemispheres 125.6
Pretectal area
nTPM: 333.3
1815 Male, age 53, unknown 540.6
2316 Male, age 76, right hemisphere 473.8
1817 Female, age 42, unknown 472.7
2407 Male, age 75, both hemispheres 404.2
2007 Male, age 72, unknown 395.6
2825 Male, age 18, unknown 362.5
1944 Female, age 72, unknown 214.3
2224 Female, age 72, unknown 213.1
1816 Male, age 51, unknown 212.0
2667 Female, age 75, unknown 206.7
2273 Male, age 74, both hemispheres 170.4
Red nucleus
nTPM: 1019.2
1865 Male, age 51, unknown 1302.9
2503 Female, age 72, unknown 1204.5
2588 Male, age 74, left hemisphere 1148.3
2823 Male, age 76, right hemisphere 1108.4
1904 Male, age 53, unknown 1095.4
2227 Male, age 72, unknown 1032.4
1821 Female, age 72, unknown 1025.6
2769 Male, age 72, unknown 1016.6
1954 Female, age 42, unknown 914.3
2725 Female, age 75, unknown 908.9
2785 Male, age 18, unknown 853.4
2584 Male, age 75, left hemisphere 619.3
Substantia nigra
nTPM: 461.0
2665 Male, age 74, both hemispheres 586.4
1889 Female, age 72, unknown 512.9
2409 Female, age 72, unknown 511.0
2699 Male, age 18, unknown 486.0
2583 Male, age 75, right hemisphere 484.3
2590 Female, age 75, unknown 484.3
1851 Male, age 51, unknown 455.9
1941 Male, age 53, unknown 393.1
2241 Male, age 72, unknown 389.8
1916 Female, age 42, unknown 306.4
Superior colliculus
nTPM: 486.2
1995 Male, age 72, unknown 645.1
2668 Female, age 75, unknown 622.7
2587 Male, age 74, left hemisphere 612.6
1913 Female, age 42, unknown 610.3
1895 Male, age 76, right hemisphere 589.2
1839 Male, age 51, unknown 565.5
2664 Male, age 75, both hemispheres 363.9
1796 Male, age 53, unknown 320.3
2087 Female, age 72, unknown 269.2
2261 Male, age 18, unknown 263.5
Ventral tegmental area
nTPM: 508.8
2223 Female, age 72, unknown 912.3
2410 Female, age 72, unknown 546.7
2218 Male, age 76, both hemispheres 439.4
1942 Male, age 51, unknown 414.4
2021 Male, age 53, unknown 391.8
1915 Female, age 42, unknown 348.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 842.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 842.8
Samples: 139

Max nTPM: 2377.0
Min nTPM: 141.0
Std nTPM: 490.5
Median nTPM: 675.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 2377.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 2195.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 2194.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2136.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1997.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 1976.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 1962.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1757.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1749.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 1710.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1703.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 691.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 691.6
FF:10158-103A5 76 years, female 691.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 610.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 536.9
Samples: 4

Max nTPM: 812.7
Min nTPM: 293.1
Sample A Female 589.3
Sample B Female 293.1
Sample C Male 452.6
Sample D Male 812.7
Midbrain
nTPM: 610.3
Samples: 4

Max nTPM: 1209.3
Min nTPM: 302.5
Sample A Female 1209.3
Sample B Female 584.5
Sample C Male 302.5
Sample D Male 344.7
Periaqueductal gray
nTPM: 350.4
Samples: 3

Max nTPM: 428.4
Min nTPM: 291.4
Sample B Female 428.4
Sample C Male 291.4
Sample D Male 331.3
Superior colliculi
nTPM: 495.7
Samples: 4

Max nTPM: 633.9
Min nTPM: 240.8
Sample A Female 633.9
Sample B Female 240.8
Sample C Male 537.5
Sample D Male 570.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 272.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 272.8
Samples: 4

Max nTPM: 293.8
Min nTPM: 259.0
Sample A Male 293.8
Sample B Male 259.0
Sample C Female 261.2
Sample D Female 277.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
77371831 Antisense, RP_070116_02_E08, Mouse strain C57BL/6J (56 days, male) 2.5

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