MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.7 nTPM
HPA Brain:67.4 nTPM
GTEx:9.7 nTPM
FANTOM5:22.6 Scaled Tags Per Million
Pig:30.3 nTPM
Mouse:4.0 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 67.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.4
2586 Male, age 75, left hemisphere 63.5
1830 Male, age 51, unknown 61.4
2828 Female, age 72, unknown 58.1
1833 Male, age 53, unknown 57.4
2019 Male, age 18, unknown 56.3
1827 Male, age 72, unknown 55.6
2219 Male, age 76, both hemispheres 53.5
2666 Male, age 74, left hemisphere 51.9
2411 Female, age 72, unknown 49.1
1870 Female, age 42, unknown 47.4
Dorsal raphe nucleus
nTPM: 59.6
2016 Female, age 72, unknown 66.3
2047 Male, age 72, unknown 61.0
1828 Male, age 53, unknown 60.8
2298 Female, age 72, unknown 58.2
2750 Male, age 76, both hemispheres 51.7
Inferior colliculus
nTPM: 62.1
2849 Male, age 72, unknown 70.4
1890 Male, age 53, unknown 61.8
1848 Female, age 42, unknown 61.3
2097 Female, age 72, unknown 54.9
Median raphe nucleus
nTPM: 57.9
2220 Male, age 76, midline 57.9
Periaquaductal grey, anterior
nTPM: 56.7
2502 Female, age 75, unknown 58.1
1947 Male, age 18, unknown 57.4
1795 Male, age 51, unknown 54.4
Periaquaductal grey, dorsal
nTPM: 66.9
2850 Male, age 76, both hemispheres 74.6
1840 Male, age 53, unknown 66.7
2464 Female, age 72, unknown 63.2
1831 Male, age 72, unknown 62.9
Periaquaductal grey, lateral
nTPM: 67.4
2140 Male, age 76, both hemispheres 77.6
2272 Male, age 74, both hemispheres 62.8
2053 Male, age 18, unknown 62.0
Pretectal area
nTPM: 57.4
2316 Male, age 76, right hemisphere 68.2
2273 Male, age 74, both hemispheres 68.0
2407 Male, age 75, both hemispheres 63.6
2825 Male, age 18, unknown 58.2
1816 Male, age 51, unknown 57.0
2224 Female, age 72, unknown 56.5
1944 Female, age 72, unknown 55.8
2007 Male, age 72, unknown 55.0
1815 Male, age 53, unknown 54.0
1817 Female, age 42, unknown 49.6
2667 Female, age 75, unknown 45.3
Red nucleus
nTPM: 55.8
2725 Female, age 75, unknown 62.6
2823 Male, age 76, right hemisphere 57.7
1954 Female, age 42, unknown 57.6
2769 Male, age 72, unknown 57.6
2503 Female, age 72, unknown 57.4
1865 Male, age 51, unknown 55.6
1904 Male, age 53, unknown 55.0
2227 Male, age 72, unknown 55.0
2588 Male, age 74, left hemisphere 54.7
2785 Male, age 18, unknown 53.9
2584 Male, age 75, left hemisphere 52.8
1821 Female, age 72, unknown 49.9
Substantia nigra
nTPM: 60.7
2590 Female, age 75, unknown 73.8
2583 Male, age 75, right hemisphere 71.3
2665 Male, age 74, both hemispheres 68.7
2699 Male, age 18, unknown 62.8
2409 Female, age 72, unknown 61.9
1941 Male, age 53, unknown 58.0
2241 Male, age 72, unknown 56.4
1851 Male, age 51, unknown 52.5
1916 Female, age 42, unknown 51.1
1889 Female, age 72, unknown 50.1
Superior colliculus
nTPM: 56.2
2664 Male, age 75, both hemispheres 63.6
1839 Male, age 51, unknown 61.3
2261 Male, age 18, unknown 57.1
1796 Male, age 53, unknown 55.7
2587 Male, age 74, left hemisphere 55.3
2087 Female, age 72, unknown 55.2
1913 Female, age 42, unknown 55.0
1995 Male, age 72, unknown 54.8
1895 Male, age 76, right hemisphere 54.4
2668 Female, age 75, unknown 49.8
Ventral tegmental area
nTPM: 56.2
2223 Female, age 72, unknown 60.7
2021 Male, age 53, unknown 59.0
2218 Male, age 76, both hemispheres 57.5
1942 Male, age 51, unknown 55.2
2410 Female, age 72, unknown 52.9
1915 Female, age 42, unknown 52.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.7
Samples: 139

Max nTPM: 19.3
Min nTPM: 3.5
Std nTPM: 3.6
Median nTPM: 9.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 19.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 19.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 18.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 18.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 18.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 17.8
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 17.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 16.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 16.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 16.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 16.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.6
FF:10158-103A5 76 years, female 22.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.3
Samples: 4

Max nTPM: 32.8
Min nTPM: 27.5
Sample A Female 27.5
Sample B Female 31.8
Sample C Male 29.1
Sample D Male 32.8
Midbrain
nTPM: 29.0
Samples: 4

Max nTPM: 37.5
Min nTPM: 22.1
Sample A Female 37.5
Sample B Female 25.1
Sample C Male 31.1
Sample D Male 22.1
Periaqueductal gray
nTPM: 25.2
Samples: 3

Max nTPM: 27.5
Min nTPM: 22.8
Sample B Female 25.3
Sample C Male 27.5
Sample D Male 22.8
Superior colliculi
nTPM: 29.4
Samples: 4

Max nTPM: 33.1
Min nTPM: 24.4
Sample A Female 24.4
Sample B Female 33.1
Sample C Male 31.1
Sample D Male 29.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.0
Samples: 4

Max nTPM: 4.4
Min nTPM: 3.6
Sample A Male 3.6
Sample B Male 3.9
Sample C Female 4.4
Sample D Female 4.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
69980166 Antisense, RP_050512_04_A05, Mouse strain C57BL/6J (56 days, male) 0.7
71670698 Antisense, RP_050512_04_A05, Mouse strain C57BL/6J (56 days, male) 0.2

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