MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.9 nTPM
HPA Brain:113.4 nTPM
GTEx:29.9 nTPM
FANTOM5:12.7 Scaled Tags Per Million
Pig:91.8 nTPM
Mouse:64.2 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 113.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.6
1827 Male, age 72, unknown 99.1
2828 Female, age 72, unknown 88.5
2666 Male, age 74, left hemisphere 66.1
2586 Male, age 75, left hemisphere 65.5
2219 Male, age 76, both hemispheres 60.3
2019 Male, age 18, unknown 54.6
1870 Female, age 42, unknown 53.3
1833 Male, age 53, unknown 48.7
1830 Male, age 51, unknown 45.3
2411 Female, age 72, unknown 44.8
Dorsal raphe nucleus
nTPM: 68.4
2298 Female, age 72, unknown 80.2
2016 Female, age 72, unknown 78.8
1828 Male, age 53, unknown 71.9
2047 Male, age 72, unknown 65.9
2750 Male, age 76, both hemispheres 45.1
Inferior colliculus
nTPM: 81.0
2097 Female, age 72, unknown 98.2
1848 Female, age 42, unknown 82.7
1890 Male, age 53, unknown 74.2
2849 Male, age 72, unknown 68.9
Median raphe nucleus
nTPM: 62.3
2220 Male, age 76, midline 62.3
Periaquaductal grey, anterior
nTPM: 113.4
1947 Male, age 18, unknown 146.4
1795 Male, age 51, unknown 112.2
2502 Female, age 75, unknown 81.7
Periaquaductal grey, dorsal
nTPM: 87.1
1840 Male, age 53, unknown 96.2
2850 Male, age 76, both hemispheres 92.2
1831 Male, age 72, unknown 88.9
2464 Female, age 72, unknown 71.0
Periaquaductal grey, lateral
nTPM: 91.9
2272 Male, age 74, both hemispheres 98.3
2140 Male, age 76, both hemispheres 94.4
2053 Male, age 18, unknown 82.9
Pretectal area
nTPM: 104.5
1816 Male, age 51, unknown 172.5
1944 Female, age 72, unknown 133.3
2273 Male, age 74, both hemispheres 123.7
2667 Female, age 75, unknown 121.3
1817 Female, age 42, unknown 112.3
1815 Male, age 53, unknown 102.1
2007 Male, age 72, unknown 99.5
2825 Male, age 18, unknown 77.4
2224 Female, age 72, unknown 74.8
2316 Male, age 76, right hemisphere 70.2
2407 Male, age 75, both hemispheres 62.6
Red nucleus
nTPM: 57.5
2503 Female, age 72, unknown 84.7
2725 Female, age 75, unknown 72.7
1821 Female, age 72, unknown 70.8
1954 Female, age 42, unknown 60.7
2785 Male, age 18, unknown 57.8
2588 Male, age 74, left hemisphere 57.4
1904 Male, age 53, unknown 51.5
1865 Male, age 51, unknown 51.3
2823 Male, age 76, right hemisphere 50.8
2769 Male, age 72, unknown 49.5
2227 Male, age 72, unknown 48.7
2584 Male, age 75, left hemisphere 34.1
Substantia nigra
nTPM: 58.3
1889 Female, age 72, unknown 90.3
1916 Female, age 42, unknown 76.0
2241 Male, age 72, unknown 60.3
1941 Male, age 53, unknown 58.4
1851 Male, age 51, unknown 58.0
2409 Female, age 72, unknown 54.1
2583 Male, age 75, right hemisphere 49.4
2590 Female, age 75, unknown 47.2
2665 Male, age 74, both hemispheres 46.0
2699 Male, age 18, unknown 43.4
Superior colliculus
nTPM: 91.2
2261 Male, age 18, unknown 134.4
2087 Female, age 72, unknown 122.6
1796 Male, age 53, unknown 103.6
2668 Female, age 75, unknown 92.1
2664 Male, age 75, both hemispheres 84.8
1995 Male, age 72, unknown 77.6
1895 Male, age 76, right hemisphere 77.1
1913 Female, age 42, unknown 75.5
2587 Male, age 74, left hemisphere 73.8
1839 Male, age 51, unknown 70.1
Ventral tegmental area
nTPM: 57.9
2410 Female, age 72, unknown 64.8
1942 Male, age 51, unknown 59.6
1915 Female, age 42, unknown 58.9
2218 Male, age 76, both hemispheres 58.1
2021 Male, age 53, unknown 57.9
2223 Female, age 72, unknown 48.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.9
Samples: 139

Max nTPM: 61.9
Min nTPM: 8.0
Std nTPM: 9.5
Median nTPM: 29.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 61.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 52.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 52.0
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 49.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 48.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 47.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 46.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 46.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 44.8
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 44.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 43.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.7
FF:10158-103A5 76 years, female 12.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 91.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 65.3
Samples: 4

Max nTPM: 82.2
Min nTPM: 50.9
Sample A Female 82.2
Sample B Female 50.9
Sample C Male 71.9
Sample D Male 56.0
Midbrain
nTPM: 91.8
Samples: 4

Max nTPM: 116.4
Min nTPM: 70.5
Sample A Female 108.7
Sample B Female 71.6
Sample C Male 116.4
Sample D Male 70.5
Periaqueductal gray
nTPM: 89.1
Samples: 3

Max nTPM: 100.4
Min nTPM: 82.7
Sample B Female 84.1
Sample C Male 100.4
Sample D Male 82.7
Superior colliculi
nTPM: 75.6
Samples: 4

Max nTPM: 104.1
Min nTPM: 54.7
Sample A Female 72.8
Sample B Female 54.7
Sample C Male 104.1
Sample D Male 70.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 64.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 64.2
Samples: 4

Max nTPM: 66.9
Min nTPM: 61.8
Sample A Male 63.5
Sample B Male 64.5
Sample C Female 66.9
Sample D Female 61.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
73513660 Antisense, RP_051121_02_E02, Mouse strain C57BL/6J (56 days, male) 0.7
74363355 Antisense, RP_051121_02_E02, Mouse strain C57BL/6J (56 days, male) 0.6

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