MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.6 nTPM
HPA Brain:60.6 nTPM
GTEx:48.6 nTPM
FANTOM5:39.6 Scaled Tags Per Million
Pig:82.0 nTPM
Mouse:104.4 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 60.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.9
1870 Female, age 42, unknown 52.3
2411 Female, age 72, unknown 51.8
1827 Male, age 72, unknown 49.5
1833 Male, age 53, unknown 41.9
1830 Male, age 51, unknown 41.7
2828 Female, age 72, unknown 38.9
2586 Male, age 75, left hemisphere 35.4
2666 Male, age 74, left hemisphere 34.3
2219 Male, age 76, both hemispheres 33.6
2019 Male, age 18, unknown 29.2
Dorsal raphe nucleus
nTPM: 49.7
2298 Female, age 72, unknown 58.0
2047 Male, age 72, unknown 54.5
2750 Male, age 76, both hemispheres 52.4
1828 Male, age 53, unknown 45.3
2016 Female, age 72, unknown 38.3
Inferior colliculus
nTPM: 40.7
1848 Female, age 42, unknown 44.9
2097 Female, age 72, unknown 44.2
2849 Male, age 72, unknown 37.5
1890 Male, age 53, unknown 36.3
Median raphe nucleus
nTPM: 60.6
2220 Male, age 76, midline 60.6
Periaquaductal grey, anterior
nTPM: 52.1
1947 Male, age 18, unknown 62.0
2502 Female, age 75, unknown 54.1
1795 Male, age 51, unknown 40.2
Periaquaductal grey, dorsal
nTPM: 41.5
2850 Male, age 76, both hemispheres 44.4
2464 Female, age 72, unknown 42.1
1840 Male, age 53, unknown 41.7
1831 Male, age 72, unknown 37.8
Periaquaductal grey, lateral
nTPM: 38.1
2053 Male, age 18, unknown 44.2
2140 Male, age 76, both hemispheres 36.7
2272 Male, age 74, both hemispheres 33.5
Pretectal area
nTPM: 44.9
2667 Female, age 75, unknown 54.8
1816 Male, age 51, unknown 50.4
2224 Female, age 72, unknown 49.0
2007 Male, age 72, unknown 47.9
2825 Male, age 18, unknown 47.1
1815 Male, age 53, unknown 46.8
1817 Female, age 42, unknown 46.7
1944 Female, age 72, unknown 42.9
2407 Male, age 75, both hemispheres 37.3
2273 Male, age 74, both hemispheres 36.2
2316 Male, age 76, right hemisphere 34.7
Red nucleus
nTPM: 37.4
1821 Female, age 72, unknown 45.0
1865 Male, age 51, unknown 44.8
1954 Female, age 42, unknown 44.0
2725 Female, age 75, unknown 43.6
2503 Female, age 72, unknown 40.5
1904 Male, age 53, unknown 35.5
2588 Male, age 74, left hemisphere 34.9
2769 Male, age 72, unknown 34.5
2227 Male, age 72, unknown 33.9
2785 Male, age 18, unknown 32.6
2823 Male, age 76, right hemisphere 30.5
2584 Male, age 75, left hemisphere 29.0
Substantia nigra
nTPM: 40.1
1916 Female, age 42, unknown 58.4
1889 Female, age 72, unknown 49.1
2241 Male, age 72, unknown 48.7
1941 Male, age 53, unknown 47.7
1851 Male, age 51, unknown 38.6
2409 Female, age 72, unknown 37.9
2699 Male, age 18, unknown 34.6
2665 Male, age 74, both hemispheres 31.8
2583 Male, age 75, right hemisphere 30.6
2590 Female, age 75, unknown 23.4
Superior colliculus
nTPM: 41.9
2261 Male, age 18, unknown 48.5
1895 Male, age 76, right hemisphere 45.0
2668 Female, age 75, unknown 44.7
2587 Male, age 74, left hemisphere 43.5
2087 Female, age 72, unknown 43.3
1839 Male, age 51, unknown 42.7
1796 Male, age 53, unknown 42.4
2664 Male, age 75, both hemispheres 40.2
1913 Female, age 42, unknown 37.4
1995 Male, age 72, unknown 31.2
Ventral tegmental area
nTPM: 42.0
2410 Female, age 72, unknown 49.8
2223 Female, age 72, unknown 45.7
1915 Female, age 42, unknown 42.4
2218 Male, age 76, both hemispheres 39.3
2021 Male, age 53, unknown 38.1
1942 Male, age 51, unknown 36.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.6
Samples: 139

Max nTPM: 120.4
Min nTPM: 26.1
Std nTPM: 15.8
Median nTPM: 45.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 120.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 103.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 85.2
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 84.1
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 80.1
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 79.6
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 77.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 77.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 77.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 74.2
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 73.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.6
FF:10158-103A5 76 years, female 39.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 82.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 69.2
Samples: 4

Max nTPM: 103.2
Min nTPM: 48.0
Sample A Female 103.2
Sample B Female 48.0
Sample C Male 71.2
Sample D Male 54.4
Midbrain
nTPM: 82.0
Samples: 4

Max nTPM: 143.2
Min nTPM: 52.3
Sample A Female 143.2
Sample B Female 74.7
Sample C Male 57.6
Sample D Male 52.3
Periaqueductal gray
nTPM: 65.2
Samples: 3

Max nTPM: 75.0
Min nTPM: 59.6
Sample B Female 61.0
Sample C Male 75.0
Sample D Male 59.6
Superior colliculi
nTPM: 60.4
Samples: 4

Max nTPM: 66.2
Min nTPM: 56.2
Sample A Female 66.2
Sample B Female 58.8
Sample C Male 56.2
Sample D Male 60.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 104.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 104.4
Samples: 4

Max nTPM: 108.0
Min nTPM: 94.4
Sample A Male 107.1
Sample B Male 108.0
Sample C Female 94.4
Sample D Female 107.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
413789 Antisense, RP_040809_01_D10, Mouse strain C57BL/6J (56 days, male) 0.3

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