MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.5 nTPM
HPA Brain:36.0 nTPM
GTEx:30.5 nTPM
FANTOM5:110.9 Scaled Tags Per Million
Pig:38.3 nTPM
Mouse:24.1 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.2
1870 Female, age 42, unknown 42.7
1830 Male, age 51, unknown 36.9
1833 Male, age 53, unknown 36.3
2411 Female, age 72, unknown 31.7
2019 Male, age 18, unknown 30.7
2586 Male, age 75, left hemisphere 30.5
2666 Male, age 74, left hemisphere 29.2
1827 Male, age 72, unknown 28.7
2828 Female, age 72, unknown 28.4
2219 Male, age 76, both hemispheres 27.3
Dorsal raphe nucleus
nTPM: 35.8
2016 Female, age 72, unknown 41.0
2298 Female, age 72, unknown 37.3
2750 Male, age 76, both hemispheres 35.8
1828 Male, age 53, unknown 33.8
2047 Male, age 72, unknown 31.1
Inferior colliculus
nTPM: 31.8
1848 Female, age 42, unknown 32.6
2097 Female, age 72, unknown 32.6
1890 Male, age 53, unknown 31.1
2849 Male, age 72, unknown 30.7
Median raphe nucleus
nTPM: 36.0
2220 Male, age 76, midline 36.0
Periaquaductal grey, anterior
nTPM: 34.8
1947 Male, age 18, unknown 38.0
2502 Female, age 75, unknown 37.3
1795 Male, age 51, unknown 29.2
Periaquaductal grey, dorsal
nTPM: 35.0
2850 Male, age 76, both hemispheres 41.8
2464 Female, age 72, unknown 33.2
1831 Male, age 72, unknown 33.1
1840 Male, age 53, unknown 32.0
Periaquaductal grey, lateral
nTPM: 33.8
2140 Male, age 76, both hemispheres 35.3
2272 Male, age 74, both hemispheres 34.6
2053 Male, age 18, unknown 31.5
Pretectal area
nTPM: 30.9
2273 Male, age 74, both hemispheres 37.6
2224 Female, age 72, unknown 33.7
1815 Male, age 53, unknown 33.5
2667 Female, age 75, unknown 32.8
2825 Male, age 18, unknown 31.9
2316 Male, age 76, right hemisphere 30.3
1817 Female, age 42, unknown 29.9
2407 Male, age 75, both hemispheres 28.8
2007 Male, age 72, unknown 28.2
1944 Female, age 72, unknown 27.7
1816 Male, age 51, unknown 25.7
Red nucleus
nTPM: 34.7
1954 Female, age 42, unknown 43.8
1821 Female, age 72, unknown 43.3
1904 Male, age 53, unknown 40.6
1865 Male, age 51, unknown 38.2
2503 Female, age 72, unknown 35.2
2227 Male, age 72, unknown 35.0
2769 Male, age 72, unknown 34.8
2823 Male, age 76, right hemisphere 34.2
2785 Male, age 18, unknown 31.8
2725 Female, age 75, unknown 30.8
2584 Male, age 75, left hemisphere 27.7
2588 Male, age 74, left hemisphere 21.5
Substantia nigra
nTPM: 33.2
2241 Male, age 72, unknown 37.9
2409 Female, age 72, unknown 36.7
2699 Male, age 18, unknown 35.6
1851 Male, age 51, unknown 35.4
1889 Female, age 72, unknown 33.0
2583 Male, age 75, right hemisphere 32.1
1916 Female, age 42, unknown 31.3
2665 Male, age 74, both hemispheres 31.2
1941 Male, age 53, unknown 29.8
2590 Female, age 75, unknown 29.4
Superior colliculus
nTPM: 32.9
1913 Female, age 42, unknown 41.6
1995 Male, age 72, unknown 41.1
2668 Female, age 75, unknown 35.4
2587 Male, age 74, left hemisphere 33.0
1839 Male, age 51, unknown 32.9
2261 Male, age 18, unknown 31.8
1895 Male, age 76, right hemisphere 29.6
2664 Male, age 75, both hemispheres 28.6
2087 Female, age 72, unknown 27.7
1796 Male, age 53, unknown 27.2
Ventral tegmental area
nTPM: 32.4
2021 Male, age 53, unknown 34.2
1942 Male, age 51, unknown 33.0
2223 Female, age 72, unknown 32.5
2410 Female, age 72, unknown 32.1
2218 Male, age 76, both hemispheres 31.5
1915 Female, age 42, unknown 31.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.5
Samples: 139

Max nTPM: 52.4
Min nTPM: 12.9
Std nTPM: 7.5
Median nTPM: 29.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 52.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 47.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 44.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 44.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 43.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 43.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 43.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 42.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 42.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 41.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 41.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 110.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 110.9
FF:10158-103A5 76 years, female 110.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.8
Samples: 4

Max nTPM: 41.8
Min nTPM: 29.7
Sample A Female 38.8
Sample B Female 41.8
Sample C Male 29.7
Sample D Male 33.0
Midbrain
nTPM: 33.9
Samples: 4

Max nTPM: 53.8
Min nTPM: 22.1
Sample A Female 53.8
Sample B Female 32.9
Sample C Male 26.7
Sample D Male 22.1
Periaqueductal gray
nTPM: 28.8
Samples: 3

Max nTPM: 30.6
Min nTPM: 26.3
Sample B Female 26.3
Sample C Male 29.6
Sample D Male 30.6
Superior colliculi
nTPM: 38.3
Samples: 4

Max nTPM: 50.4
Min nTPM: 29.3
Sample A Female 39.5
Sample B Female 50.4
Sample C Male 34.1
Sample D Male 29.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.2
Samples: 4

Max nTPM: 25.5
Min nTPM: 22.7
Sample A Male 22.7
Sample B Male 25.5
Sample C Female 24.3
Sample D Female 24.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
513019 Antisense, RP_040810_01_A10, Mouse strain C57BL/6J (56 days, male) 0.8

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