MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.2 nTPM
HPA Brain:13.7 nTPM
GTEx:4.2 nTPM
FANTOM5:33.8 Scaled Tags Per Million
Pig:31.3 nTPM
Mouse:28.3 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.2
2019 Male, age 18, unknown 13.5
2586 Male, age 75, left hemisphere 13.3
1870 Female, age 42, unknown 12.4
1833 Male, age 53, unknown 11.4
2828 Female, age 72, unknown 11.0
1830 Male, age 51, unknown 10.3
1827 Male, age 72, unknown 10.1
2666 Male, age 74, left hemisphere 10.1
2411 Female, age 72, unknown 10.0
2219 Male, age 76, both hemispheres 9.9
Dorsal raphe nucleus
nTPM: 12.3
2298 Female, age 72, unknown 16.1
2016 Female, age 72, unknown 14.8
1828 Male, age 53, unknown 13.1
2047 Male, age 72, unknown 9.6
2750 Male, age 76, both hemispheres 8.1
Inferior colliculus
nTPM: 10.0
2849 Male, age 72, unknown 10.5
2097 Female, age 72, unknown 10.1
1890 Male, age 53, unknown 9.9
1848 Female, age 42, unknown 9.5
Median raphe nucleus
nTPM: 9.1
2220 Male, age 76, midline 9.1
Periaquaductal grey, anterior
nTPM: 13.7
2502 Female, age 75, unknown 16.0
1795 Male, age 51, unknown 12.8
1947 Male, age 18, unknown 12.2
Periaquaductal grey, dorsal
nTPM: 12.0
1840 Male, age 53, unknown 14.0
2850 Male, age 76, both hemispheres 12.9
2464 Female, age 72, unknown 10.8
1831 Male, age 72, unknown 10.2
Periaquaductal grey, lateral
nTPM: 12.2
2140 Male, age 76, both hemispheres 13.3
2272 Male, age 74, both hemispheres 12.2
2053 Male, age 18, unknown 11.0
Pretectal area
nTPM: 12.2
2273 Male, age 74, both hemispheres 15.9
1815 Male, age 53, unknown 13.8
2224 Female, age 72, unknown 13.8
1817 Female, age 42, unknown 13.0
2007 Male, age 72, unknown 12.5
2407 Male, age 75, both hemispheres 11.9
2825 Male, age 18, unknown 11.5
1816 Male, age 51, unknown 11.2
1944 Female, age 72, unknown 11.0
2316 Male, age 76, right hemisphere 10.6
2667 Female, age 75, unknown 9.3
Red nucleus
nTPM: 11.1
2725 Female, age 75, unknown 12.8
1904 Male, age 53, unknown 12.1
2785 Male, age 18, unknown 11.7
2588 Male, age 74, left hemisphere 11.6
2769 Male, age 72, unknown 11.6
2503 Female, age 72, unknown 11.5
2227 Male, age 72, unknown 11.3
2584 Male, age 75, left hemisphere 11.2
1865 Male, age 51, unknown 10.6
1821 Female, age 72, unknown 10.3
1954 Female, age 42, unknown 10.3
2823 Male, age 76, right hemisphere 8.0
Substantia nigra
nTPM: 12.1
1851 Male, age 51, unknown 14.6
2699 Male, age 18, unknown 14.5
1916 Female, age 42, unknown 14.2
2241 Male, age 72, unknown 13.6
2583 Male, age 75, right hemisphere 11.9
2665 Male, age 74, both hemispheres 11.8
2590 Female, age 75, unknown 11.1
1889 Female, age 72, unknown 10.4
2409 Female, age 72, unknown 10.0
1941 Male, age 53, unknown 8.4
Superior colliculus
nTPM: 11.5
2664 Male, age 75, both hemispheres 15.5
1995 Male, age 72, unknown 13.7
2587 Male, age 74, left hemisphere 12.8
1839 Male, age 51, unknown 11.7
1913 Female, age 42, unknown 11.6
2668 Female, age 75, unknown 11.5
1796 Male, age 53, unknown 10.4
2087 Female, age 72, unknown 9.8
2261 Male, age 18, unknown 9.3
1895 Male, age 76, right hemisphere 9.2
Ventral tegmental area
nTPM: 10.4
1915 Female, age 42, unknown 12.1
1942 Male, age 51, unknown 10.6
2218 Male, age 76, both hemispheres 10.3
2223 Female, age 72, unknown 9.9
2410 Female, age 72, unknown 9.9
2021 Male, age 53, unknown 9.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.2
Samples: 139

Max nTPM: 8.7
Min nTPM: 2.3
Std nTPM: 0.9
Median nTPM: 4.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 8.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 6.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 6.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 6.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 6.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 6.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 5.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 5.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 5.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 5.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 5.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.8
FF:10158-103A5 76 years, female 33.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.4
Samples: 4

Max nTPM: 32.2
Min nTPM: 25.5
Sample A Female 32.2
Sample B Female 29.3
Sample C Male 30.6
Sample D Male 25.5
Midbrain
nTPM: 29.3
Samples: 4

Max nTPM: 35.8
Min nTPM: 23.8
Sample A Female 23.8
Sample B Female 28.4
Sample C Male 35.8
Sample D Male 29.2
Periaqueductal gray
nTPM: 29.2
Samples: 3

Max nTPM: 31.0
Min nTPM: 27.4
Sample B Female 29.1
Sample C Male 31.0
Sample D Male 27.4
Superior colliculi
nTPM: 31.4
Samples: 4

Max nTPM: 35.7
Min nTPM: 23.5
Sample A Female 34.0
Sample B Female 23.5
Sample C Male 35.7
Sample D Male 32.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.3
Samples: 4

Max nTPM: 30.1
Min nTPM: 26.2
Sample A Male 26.2
Sample B Male 29.5
Sample C Female 27.5
Sample D Female 30.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
70565545 Antisense, RP_050628_01_B12, Mouse strain C57BL/6J (56 days, male) 0.7
71670743 Antisense, RP_050628_01_B12, Mouse strain C57BL/6J (56 days, male) 0.2

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