MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.7 nTPM
HPA Brain:49.1 nTPM
GTEx:47.7 nTPM
FANTOM5:72.5 Scaled Tags Per Million
Pig:79.1 nTPM
Mouse:183.0 nTPM
Allen mouse:11.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 49.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.2
2019 Male, age 18, unknown 45.8
2666 Male, age 74, left hemisphere 44.4
2219 Male, age 76, both hemispheres 43.9
1827 Male, age 72, unknown 43.5
2828 Female, age 72, unknown 37.5
2411 Female, age 72, unknown 36.8
2586 Male, age 75, left hemisphere 34.6
1870 Female, age 42, unknown 33.7
1833 Male, age 53, unknown 32.7
1830 Male, age 51, unknown 28.7
Dorsal raphe nucleus
nTPM: 38.1
2298 Female, age 72, unknown 45.1
1828 Male, age 53, unknown 40.9
2047 Male, age 72, unknown 38.1
2750 Male, age 76, both hemispheres 34.0
2016 Female, age 72, unknown 32.7
Inferior colliculus
nTPM: 39.4
2097 Female, age 72, unknown 46.3
1890 Male, age 53, unknown 40.2
1848 Female, age 42, unknown 35.8
2849 Male, age 72, unknown 35.5
Median raphe nucleus
nTPM: 37.7
2220 Male, age 76, midline 37.7
Periaquaductal grey, anterior
nTPM: 38.3
1795 Male, age 51, unknown 44.3
1947 Male, age 18, unknown 36.6
2502 Female, age 75, unknown 34.0
Periaquaductal grey, dorsal
nTPM: 34.0
1831 Male, age 72, unknown 38.2
2850 Male, age 76, both hemispheres 36.9
1840 Male, age 53, unknown 31.6
2464 Female, age 72, unknown 29.4
Periaquaductal grey, lateral
nTPM: 38.1
2272 Male, age 74, both hemispheres 48.8
2053 Male, age 18, unknown 35.4
2140 Male, age 76, both hemispheres 30.1
Pretectal area
nTPM: 49.1
1816 Male, age 51, unknown 66.9
1944 Female, age 72, unknown 59.7
1817 Female, age 42, unknown 59.1
2667 Female, age 75, unknown 59.1
2007 Male, age 72, unknown 57.3
1815 Male, age 53, unknown 50.3
2273 Male, age 74, both hemispheres 46.0
2407 Male, age 75, both hemispheres 41.3
2224 Female, age 72, unknown 38.6
2825 Male, age 18, unknown 31.7
2316 Male, age 76, right hemisphere 30.3
Red nucleus
nTPM: 37.2
2725 Female, age 75, unknown 44.1
1821 Female, age 72, unknown 44.0
2785 Male, age 18, unknown 43.8
2584 Male, age 75, left hemisphere 39.3
2503 Female, age 72, unknown 37.0
2588 Male, age 74, left hemisphere 36.8
1904 Male, age 53, unknown 34.5
2823 Male, age 76, right hemisphere 34.3
2769 Male, age 72, unknown 34.0
1865 Male, age 51, unknown 33.0
2227 Male, age 72, unknown 33.0
1954 Female, age 42, unknown 32.9
Substantia nigra
nTPM: 46.4
1916 Female, age 42, unknown 64.8
1851 Male, age 51, unknown 56.1
1941 Male, age 53, unknown 55.7
1889 Female, age 72, unknown 51.7
2699 Male, age 18, unknown 47.7
2665 Male, age 74, both hemispheres 43.1
2241 Male, age 72, unknown 39.8
2583 Male, age 75, right hemisphere 38.2
2590 Female, age 75, unknown 35.7
2409 Female, age 72, unknown 31.1
Superior colliculus
nTPM: 40.2
2087 Female, age 72, unknown 48.6
1796 Male, age 53, unknown 48.0
2587 Male, age 74, left hemisphere 45.2
2261 Male, age 18, unknown 43.4
1913 Female, age 42, unknown 39.3
1995 Male, age 72, unknown 38.7
2668 Female, age 75, unknown 38.2
1895 Male, age 76, right hemisphere 36.9
2664 Male, age 75, both hemispheres 32.3
1839 Male, age 51, unknown 31.5
Ventral tegmental area
nTPM: 44.3
1915 Female, age 42, unknown 53.5
2218 Male, age 76, both hemispheres 52.0
2410 Female, age 72, unknown 48.3
1942 Male, age 51, unknown 40.0
2223 Female, age 72, unknown 38.8
2021 Male, age 53, unknown 33.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.7
Samples: 139

Max nTPM: 115.6
Min nTPM: 25.6
Std nTPM: 13.7
Median nTPM: 44.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 115.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 94.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 80.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 79.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 74.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 74.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 73.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 73.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 72.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 70.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 69.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.5
FF:10158-103A5 76 years, female 72.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 79.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 70.6
Samples: 4

Max nTPM: 86.1
Min nTPM: 56.8
Sample A Female 86.1
Sample B Female 56.8
Sample C Male 76.8
Sample D Male 62.5
Midbrain
nTPM: 79.1
Samples: 4

Max nTPM: 100.4
Min nTPM: 64.7
Sample A Female 100.4
Sample B Female 64.7
Sample C Male 81.3
Sample D Male 70.0
Periaqueductal gray
nTPM: 57.1
Samples: 3

Max nTPM: 62.4
Min nTPM: 51.9
Sample B Female 57.1
Sample C Male 62.4
Sample D Male 51.9
Superior colliculi
nTPM: 76.0
Samples: 4

Max nTPM: 84.2
Min nTPM: 61.2
Sample A Female 84.2
Sample B Female 61.2
Sample C Male 84.1
Sample D Male 74.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 183.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 183.0
Samples: 4

Max nTPM: 189.4
Min nTPM: 174.7
Sample A Male 186.2
Sample B Male 181.7
Sample C Female 174.7
Sample D Female 189.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.2
81600144 Antisense, RP_080313_02_E11, Mouse strain C57BL/6J (56 days, male) 12.0
69735216 Antisense, RP_050503_02_C11, Mouse strain C57BL/6J (56 days, male) 10.4

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