HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:236.6 nTPM
HPA Brain:254.1 nTPM
GTEx:236.6 nTPM
FANTOM5:132.9 Scaled Tags Per Million
Pig:101.9 nTPM
Mouse:66.7 nTPM
Allen mouse:10.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003878
Glial cells Low
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 254.1
Sample id Sample description nTPM
Hippocampus
nTPM: 252.9
2621 Female, age 67, right hemisphere 317.0
2148 Female, age 91, left hemisphere 281.5
2529 Female, age 94, left hemisphere 258.2
1898 Male, age 80, left hemisphere 240.0
1911 Female, age 85, right hemisphere 221.2
1855 Male, age 76, left hemisphere 199.7
Dentate gyrus
nTPM: 226.4
2531 Female, age 67, both hemispheres 335.5
1927 Female, age 91, both hemispheres 270.9
2530 Female, age 94, left hemisphere 219.7
2528 Male, age 74, both hemispheres 197.8
2010 Male, age 76, both hemispheres 173.7
2246 Female, age 85, both hemispheres 160.7
Entorhinal gyrus
nTPM: 192.5
2613 Female, age 94, left hemisphere 257.5
2686 Male, age 75, right hemisphere 223.0
2764 Male, age 80, right hemisphere 185.7
1787 Male, age 76, left hemisphere 172.9
1938 Female, age 85, left hemisphere 167.0
2117 Female, age 91, right hemisphere 149.2
Hippocampus, CA1
nTPM: 218.2
2749 Male, age 80, left hemisphere 260.1
2527 Male, age 74, both hemispheres 244.0
1873 Female, age 85, both hemispheres 215.6
2082 Female, age 91, right hemisphere 189.0
2045 Male, age 76, both hemispheres 182.2
Hippocampus, CA2
nTPM: 211.9
1963 Male, age 80, left hemisphere 339.7
2113 Female, age 91, right hemisphere 222.0
2437 Female, age 94, left hemisphere 215.6
1892 Male, age 76, both hemispheres 198.1
2249 Male, age 74, both hemispheres 153.2
1940 Female, age 85, left hemisphere 142.8
Hippocampus, CA3
nTPM: 254.1
2861 Female, age 67, both hemispheres 398.0
2620 Female, age 94, left hemisphere 328.8
2137 Male, age 80, left hemisphere 302.3
1867 Male, age 76, both hemispheres 174.1
2436 Male, age 74, both hemispheres 163.4
1891 Female, age 85, both hemispheres 158.1
Parahippocampal cortex
nTPM: 188.5
2245 Female, age 91, both hemispheres 283.2
2622 Female, age 67, right hemisphere 229.5
2250 Female, age 67, right hemisphere 191.7
2693 Female, age 94, both hemispheres 187.6
2018 Male, age 76, both hemispheres 179.1
2532 Female, age 72, left hemisphere 173.9
1850 Male, age 80, both hemispheres 173.2
1933 Female, age 85, both hemispheres 163.9
1990 Female, age 91, right hemisphere 161.0
2692 Male, age 74, both hemispheres 142.2
Perirhinal gyrus
nTPM: 196.7
1794 Male, age 80, right hemisphere 213.7
1847 Female, age 91, left hemisphere 209.1
2521 Female, age 94, right hemisphere 198.6
1841 Female, age 85, right hemisphere 190.8
2848 Male, age 76, right hemisphere 171.0
Subiculum
nTPM: 150.2
2729 Female, age 91, right hemisphere 189.6
1901 Male, age 80, both hemispheres 157.4
2619 Male, age 74, both hemispheres 152.2
1977 Female, age 85, both hemispheres 142.8
2042 Male, age 76, both hemispheres 138.5
2438 Female, age 94, left hemisphere 120.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 236.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 236.6
Samples: 197

Max nTPM: 645.6
Min nTPM: 11.6
Std nTPM: 136.2
Median nTPM: 223.8
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 645.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 644.4
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 643.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 585.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 577.4
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 547.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 529.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 525.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 525.4
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 521.6
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 506.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 132.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 132.9
FF:10153-102I9 76 years, female 139.2
FF:10169-103B7 60 years, female 126.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 101.9
Pig sample Sample description nTPM
Subiculum
nTPM: 88.1
Samples: 4

Max nTPM: 132.1
Min nTPM: 61.5
Sample A Female 132.1
Sample B Female 80.4
Sample C Male 78.5
Sample D Male 61.5
Dorsal hippocampus
nTPM: 82.0
Samples: 4

Max nTPM: 106.3
Min nTPM: 59.2
Sample A Female 106.3
Sample B Female 93.5
Sample C Male 68.9
Sample D Male 59.2
Entorhinal cortex
nTPM: 101.9
Samples: 4

Max nTPM: 128.3
Min nTPM: 78.1
Sample A Female 98.1
Sample B Female 103.2
Sample C Male 128.3
Sample D Male 78.1
Ventral hippocampus
nTPM: 92.6
Samples: 4

Max nTPM: 114.0
Min nTPM: 79.3
Sample A Female 86.3
Sample B Female 79.3
Sample C Male 114.0
Sample D Male 90.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 66.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 66.7
Samples: 4

Max nTPM: 70.8
Min nTPM: 64.5
Sample A Male 65.1
Sample B Male 66.3
Sample C Female 64.5
Sample D Female 70.8
Hippocampal formation
nTPM: 53.6
Samples: 4

Max nTPM: 63.8
Min nTPM: 47.3
Sample A Male 63.8
Sample B Male 53.6
Sample C Female 47.3
Sample D Female 49.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.1
68844313 Antisense, RP_050222_01_D03, Mouse strain C57BL/6J (56 days, male) 10.1

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