MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.3 nTPM
HPA Brain:81.7 nTPM
GTEx:43.3 nTPM
FANTOM5:14.1 Scaled Tags Per Million
Pig:37.1 nTPM
Mouse:33.8 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 81.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.4
1827 Male, age 72, unknown 82.2
2586 Male, age 75, left hemisphere 81.7
2828 Female, age 72, unknown 76.7
2219 Male, age 76, both hemispheres 76.4
2666 Male, age 74, left hemisphere 63.5
1870 Female, age 42, unknown 47.9
2019 Male, age 18, unknown 44.3
2411 Female, age 72, unknown 42.1
1830 Male, age 51, unknown 41.3
1833 Male, age 53, unknown 38.3
Dorsal raphe nucleus
nTPM: 51.9
2298 Female, age 72, unknown 67.0
2047 Male, age 72, unknown 56.4
2016 Female, age 72, unknown 52.8
1828 Male, age 53, unknown 45.8
2750 Male, age 76, both hemispheres 37.7
Inferior colliculus
nTPM: 68.6
2097 Female, age 72, unknown 76.6
2849 Male, age 72, unknown 71.2
1890 Male, age 53, unknown 63.5
1848 Female, age 42, unknown 63.2
Median raphe nucleus
nTPM: 50.4
2220 Male, age 76, midline 50.4
Periaquaductal grey, anterior
nTPM: 81.7
1795 Male, age 51, unknown 92.3
2502 Female, age 75, unknown 82.1
1947 Male, age 18, unknown 70.7
Periaquaductal grey, dorsal
nTPM: 66.1
1840 Male, age 53, unknown 74.0
1831 Male, age 72, unknown 70.0
2850 Male, age 76, both hemispheres 65.7
2464 Female, age 72, unknown 54.6
Periaquaductal grey, lateral
nTPM: 62.2
2053 Male, age 18, unknown 62.7
2272 Male, age 74, both hemispheres 62.1
2140 Male, age 76, both hemispheres 61.9
Pretectal area
nTPM: 65.8
2407 Male, age 75, both hemispheres 77.3
1816 Male, age 51, unknown 74.3
2007 Male, age 72, unknown 72.1
2825 Male, age 18, unknown 68.7
2667 Female, age 75, unknown 68.2
1944 Female, age 72, unknown 65.5
2273 Male, age 74, both hemispheres 64.2
1817 Female, age 42, unknown 62.0
2224 Female, age 72, unknown 60.9
1815 Male, age 53, unknown 58.4
2316 Male, age 76, right hemisphere 51.9
Red nucleus
nTPM: 39.8
2584 Male, age 75, left hemisphere 55.3
2785 Male, age 18, unknown 53.2
2588 Male, age 74, left hemisphere 44.4
2725 Female, age 75, unknown 41.5
1821 Female, age 72, unknown 40.9
2503 Female, age 72, unknown 39.7
2769 Male, age 72, unknown 39.2
1954 Female, age 42, unknown 38.5
2227 Male, age 72, unknown 38.4
1865 Male, age 51, unknown 32.2
2823 Male, age 76, right hemisphere 27.8
1904 Male, age 53, unknown 27.0
Substantia nigra
nTPM: 43.6
1941 Male, age 53, unknown 75.2
2665 Male, age 74, both hemispheres 52.8
1889 Female, age 72, unknown 50.4
1851 Male, age 51, unknown 47.1
1916 Female, age 42, unknown 44.3
2583 Male, age 75, right hemisphere 40.0
2699 Male, age 18, unknown 39.0
2590 Female, age 75, unknown 32.3
2241 Male, age 72, unknown 27.7
2409 Female, age 72, unknown 27.4
Superior colliculus
nTPM: 66.7
2664 Male, age 75, both hemispheres 105.0
1796 Male, age 53, unknown 88.2
2668 Female, age 75, unknown 74.4
2261 Male, age 18, unknown 70.8
1839 Male, age 51, unknown 63.2
2087 Female, age 72, unknown 58.0
1895 Male, age 76, right hemisphere 56.4
2587 Male, age 74, left hemisphere 55.2
1995 Male, age 72, unknown 50.1
1913 Female, age 42, unknown 45.7
Ventral tegmental area
nTPM: 54.6
2223 Female, age 72, unknown 72.5
1942 Male, age 51, unknown 62.4
2021 Male, age 53, unknown 55.0
2218 Male, age 76, both hemispheres 52.5
1915 Female, age 42, unknown 50.5
2410 Female, age 72, unknown 34.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.3
Samples: 139

Max nTPM: 129.0
Min nTPM: 15.0
Std nTPM: 18.0
Median nTPM: 41.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 129.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 92.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 87.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 87.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 85.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 79.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 77.3
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 76.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 72.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 71.1
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 70.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.1
FF:10158-103A5 76 years, female 14.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.5
Samples: 4

Max nTPM: 34.9
Min nTPM: 12.3
Sample A Female 34.9
Sample B Female 22.2
Sample C Male 32.5
Sample D Male 12.3
Midbrain
nTPM: 37.1
Samples: 4

Max nTPM: 69.4
Min nTPM: 11.6
Sample A Female 11.6
Sample B Female 31.4
Sample C Male 36.1
Sample D Male 69.4
Periaqueductal gray
nTPM: 31.8
Samples: 3

Max nTPM: 37.5
Min nTPM: 23.3
Sample B Female 34.5
Sample C Male 37.5
Sample D Male 23.3
Superior colliculi
nTPM: 29.7
Samples: 4

Max nTPM: 46.7
Min nTPM: 14.2
Sample A Female 46.7
Sample B Female 14.2
Sample C Male 19.5
Sample D Male 38.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.8
Samples: 4

Max nTPM: 36.3
Min nTPM: 32.3
Sample A Male 36.3
Sample B Male 32.8
Sample C Female 33.9
Sample D Female 32.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
68844313 Antisense, RP_050222_01_D03, Mouse strain C57BL/6J (56 days, male) 2.2

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