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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.1
nTPM
Monaco:
39.1
nTPM
Schmiedel:
41.7
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
16.1
HPA sample
nTPM
gdT-cell nTPM: 11.7
Samples: 6
Max nTPM: 19.0
Min nTPM: 4.3
P10809_1007
11.0
P10809_1022
19.0
P10809_1041
16.0
P10809_1060
8.8
P10809_1077
4.3
P10809_1098
11.0
MAIT T-cell nTPM: 16.1
Samples: 6
Max nTPM: 24.0
Min nTPM: 3.5
P10809_1006
24.0
P10809_1024
22.5
P10809_1043
14.4
P10809_1062
20.1
P10809_1083
3.5
P10809_1097
12.3
Memory CD4 T-cell nTPM: 8.8
Samples: 6
Max nTPM: 11.1
Min nTPM: 6.9
P10809_1014
10.0
P10809_1026
6.9
P10809_1045
11.1
P10809_1064
7.2
P10809_1086
8.9
P10809_1113
8.5
Memory CD8 T-cell nTPM: 9.8
Samples: 5
Max nTPM: 15.0
Min nTPM: 6.0
P10809_1012
7.7
P10809_1027
6.0
P10809_1046
15.0
P10809_1065
11.1
P10809_1111
9.3
Naive CD4 T-cell nTPM: 7.1
Samples: 6
Max nTPM: 9.3
Min nTPM: 5.9
P10809_1015
7.7
P10809_1030
6.4
P10809_1049
7.1
P10809_1068
9.3
P10809_1085
6.3
P10809_1112
5.9
Naive CD8 T-cell nTPM: 8.2
Samples: 6
Max nTPM: 11.9
Min nTPM: 3.1
P10809_1016
6.8
P10809_1031
3.1
P10809_1050
11.9
P10809_1069
7.5
P10809_1087
10.0
P10809_1110
9.7
T-reg nTPM: 8.2
Samples: 6
Max nTPM: 11.7
Min nTPM: 5.5
P10809_1018
8.5
P10809_1037
11.7
P10809_1056
5.5
P10809_1075
8.5
P10809_1094
7.9
P10809_1106
7.1
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
39.1
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 17.4
Samples: 4
Max nTPM: 24.0
Min nTPM: 12.9
RHH5202_R3573
12.9
RHH5230_R3602
24.0
RHH5259_R3631
16.6
RHH5288_R3660
16.0
Effector memory CD8 T-cell nTPM: 23.8
Samples: 4
Max nTPM: 26.1
Min nTPM: 21.7
RHH5203_R3574
26.1
RHH5231_R3603
25.2
RHH5260_R3632
21.7
RHH5289_R3661
22.2
MAIT T-cell nTPM: 39.1
Samples: 4
Max nTPM: 48.8
Min nTPM: 28.7
RHH5233_R3605
38.2
RHH5205_R3576
48.8
RHH5262_R3634
40.6
RHH5297_R3663
28.7
Memory CD4 T-cell TFH nTPM: 25.9
Samples: 4
Max nTPM: 32.9
Min nTPM: 16.2
RHH5300_R3666
21.5
RHH5236_R3608
16.2
RHH5265_R3637
32.8
RHH5208_R3579
32.9
Memory CD4 T-cell Th1 nTPM: 18.6
Samples: 4
Max nTPM: 26.2
Min nTPM: 10.1
RHH5210_R3581
26.2
RHH5302_R3668
10.1
RHH5238_R3610
13.9
RHH5267_R3639
24.0
Memory CD4 T-cell Th1/Th17 nTPM: 18.9
Samples: 4
Max nTPM: 21.6
Min nTPM: 15.9
RHH5303_R3669
19.4
RHH5211_R3582
18.7
RHH5239_R3611
21.6
RHH5268_R3640
15.9
Memory CD4 T-cell Th17 nTPM: 21.4
Samples: 4
Max nTPM: 40.1
Min nTPM: 9.9
RHH5304_R3670
12.1
RHH5212_R3583
23.6
RHH5240_R3612
40.1
RHH5269_R3641
9.9
Memory CD4 T-cell Th2 nTPM: 19.5
Samples: 4
Max nTPM: 26.9
Min nTPM: 13.0
RHH5305_R3671
26.9
RHH5213_R3584
16.2
RHH5241_R3613
13.0
RHH5270_R3642
21.7
Naive CD4 T-cell nTPM: 15.3
Samples: 4
Max nTPM: 23.1
Min nTPM: 6.2
RHH5306_R3672
16.8
RHH5214_R3585
6.2
RHH5242_R3614
15.2
RHH5271_R3643
23.1
Naive CD8 T-cell nTPM: 12.9
Samples: 4
Max nTPM: 17.7
Min nTPM: 8.9
RHH5201_R3572
13.6
RHH5229_R3601
17.7
RHH5258_R3630
8.9
RHH5287_R3659
11.5
Non-Vd2 gdTCR nTPM: 20.0
Samples: 4
Max nTPM: 32.3
Min nTPM: 14.2
RHH5235_R3607
32.3
RHH5264_R3636
17.4
RHH5207_R3578
14.2
RHH5299_R3665
16.2
T-reg nTPM: 18.3
Samples: 4
Max nTPM: 25.9
Min nTPM: 9.2
RHH5301_R3667
9.2
RHH5237_R3609
21.6
RHH5266_R3638
16.5
RHH5209_R3580
25.9
Terminal effector memory CD4 T-cell nTPM: 20.5
Samples: 2
Max nTPM: 24.3
Min nTPM: 16.6
RHH5243_R3615
24.3
RHH5272_R3644
16.6
Terminal effector memory CD8 T-cell nTPM: 14.7
Samples: 4
Max nTPM: 17.6
Min nTPM: 7.8
RHH5232_R3604
17.6
RHH5204_R3575
7.8
RHH5261_R3633
17.0
RHH5296_R3662
16.2
Vd2 gdTCR nTPM: 23.9
Samples: 4
Max nTPM: 31.9
Min nTPM: 9.8
RHH5234_R3606
31.8
RHH5206_R3577
31.9
RHH5263_R3635
22.2
RHH5298_R3664
9.8
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
