MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.5 nTPM
HPA Brain:68.5 nTPM
GTEx:12.5 nTPM
FANTOM5:77.2 Scaled Tags Per Million
Pig:79.0 nTPM
Mouse:33.6 nTPM
Allen mouse:4.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 68.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.1
1827 Male, age 72, unknown 83.3
2666 Male, age 74, left hemisphere 80.4
2828 Female, age 72, unknown 67.6
2019 Male, age 18, unknown 52.4
1870 Female, age 42, unknown 49.2
2586 Male, age 75, left hemisphere 47.4
1830 Male, age 51, unknown 46.3
2411 Female, age 72, unknown 45.5
1833 Male, age 53, unknown 45.4
2219 Male, age 76, both hemispheres 43.8
Dorsal raphe nucleus
nTPM: 42.2
2750 Male, age 76, both hemispheres 48.9
2016 Female, age 72, unknown 45.1
2298 Female, age 72, unknown 43.2
1828 Male, age 53, unknown 41.5
2047 Male, age 72, unknown 32.2
Inferior colliculus
nTPM: 45.6
2097 Female, age 72, unknown 58.8
1890 Male, age 53, unknown 54.3
1848 Female, age 42, unknown 35.3
2849 Male, age 72, unknown 34.2
Median raphe nucleus
nTPM: 44.3
2220 Male, age 76, midline 44.3
Periaquaductal grey, anterior
nTPM: 65.4
1795 Male, age 51, unknown 76.1
1947 Male, age 18, unknown 70.0
2502 Female, age 75, unknown 50.1
Periaquaductal grey, dorsal
nTPM: 50.2
1831 Male, age 72, unknown 70.6
2850 Male, age 76, both hemispheres 47.4
2464 Female, age 72, unknown 45.0
1840 Male, age 53, unknown 37.9
Periaquaductal grey, lateral
nTPM: 55.9
2053 Male, age 18, unknown 63.1
2272 Male, age 74, both hemispheres 59.1
2140 Male, age 76, both hemispheres 45.5
Pretectal area
nTPM: 68.5
1816 Male, age 51, unknown 123.7
1944 Female, age 72, unknown 95.3
2007 Male, age 72, unknown 77.5
1815 Male, age 53, unknown 74.9
1817 Female, age 42, unknown 73.0
2407 Male, age 75, both hemispheres 60.4
2273 Male, age 74, both hemispheres 58.1
2667 Female, age 75, unknown 52.7
2316 Male, age 76, right hemisphere 50.0
2825 Male, age 18, unknown 44.6
2224 Female, age 72, unknown 43.6
Red nucleus
nTPM: 47.9
2503 Female, age 72, unknown 57.2
2584 Male, age 75, left hemisphere 54.6
2785 Male, age 18, unknown 52.5
2823 Male, age 76, right hemisphere 51.5
2725 Female, age 75, unknown 51.2
1904 Male, age 53, unknown 51.1
1865 Male, age 51, unknown 50.5
2588 Male, age 74, left hemisphere 44.4
1954 Female, age 42, unknown 42.2
2227 Male, age 72, unknown 40.5
2769 Male, age 72, unknown 39.6
1821 Female, age 72, unknown 39.2
Substantia nigra
nTPM: 52.8
2665 Male, age 74, both hemispheres 72.6
2583 Male, age 75, right hemisphere 69.0
2590 Female, age 75, unknown 67.1
1889 Female, age 72, unknown 58.6
2409 Female, age 72, unknown 51.0
1851 Male, age 51, unknown 42.8
1941 Male, age 53, unknown 42.6
1916 Female, age 42, unknown 42.3
2241 Male, age 72, unknown 40.8
2699 Male, age 18, unknown 40.6
Superior colliculus
nTPM: 68.3
2261 Male, age 18, unknown 92.3
2087 Female, age 72, unknown 85.4
1913 Female, age 42, unknown 81.1
1796 Male, age 53, unknown 77.7
2668 Female, age 75, unknown 74.4
1995 Male, age 72, unknown 74.2
2664 Male, age 75, both hemispheres 59.8
2587 Male, age 74, left hemisphere 59.1
1839 Male, age 51, unknown 40.4
1895 Male, age 76, right hemisphere 39.0
Ventral tegmental area
nTPM: 46.0
2223 Female, age 72, unknown 48.9
2021 Male, age 53, unknown 48.3
2410 Female, age 72, unknown 47.6
2218 Male, age 76, both hemispheres 47.4
1942 Male, age 51, unknown 44.1
1915 Female, age 42, unknown 39.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.5
Samples: 139

Max nTPM: 29.0
Min nTPM: 5.0
Std nTPM: 3.7
Median nTPM: 11.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 29.0
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 24.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 23.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 21.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 21.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 20.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 18.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 18.0
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 17.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 17.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 17.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 77.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 77.2
FF:10158-103A5 76 years, female 77.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 79.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 54.1
Samples: 4

Max nTPM: 56.2
Min nTPM: 51.2
Sample A Female 53.3
Sample B Female 55.5
Sample C Male 56.2
Sample D Male 51.2
Midbrain
nTPM: 79.0
Samples: 4

Max nTPM: 155.0
Min nTPM: 50.8
Sample A Female 50.8
Sample B Female 54.2
Sample C Male 155.0
Sample D Male 56.1
Periaqueductal gray
nTPM: 48.2
Samples: 3

Max nTPM: 49.5
Min nTPM: 45.9
Sample B Female 49.5
Sample C Male 49.2
Sample D Male 45.9
Superior colliculi
nTPM: 74.9
Samples: 4

Max nTPM: 123.0
Min nTPM: 53.7
Sample A Female 53.7
Sample B Female 63.0
Sample C Male 123.0
Sample D Male 60.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.6
Samples: 4

Max nTPM: 37.4
Min nTPM: 31.3
Sample A Male 31.3
Sample B Male 33.7
Sample C Female 37.4
Sample D Female 32.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.8
199392 Antisense, RP_040507_02_E07, Mouse strain C57BL/6J (56 days, male) 9.1
100142513 Antisense, RP_110421_01_G05, Mouse strain C57BL/6J (56 days, male) 0.4

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