MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.5 nTPM
HPA Brain:76.9 nTPM
GTEx:39.5 nTPM
FANTOM5:43.5 Scaled Tags Per Million
Pig:59.1 nTPM
Mouse:27.2 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 76.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 70.6
2586 Male, age 75, left hemisphere 83.2
1827 Male, age 72, unknown 78.8
2666 Male, age 74, left hemisphere 74.5
1833 Male, age 53, unknown 72.9
2219 Male, age 76, both hemispheres 71.8
2411 Female, age 72, unknown 68.7
2828 Female, age 72, unknown 67.3
1870 Female, age 42, unknown 66.4
1830 Male, age 51, unknown 65.1
2019 Male, age 18, unknown 57.2
Dorsal raphe nucleus
nTPM: 66.7
2298 Female, age 72, unknown 73.6
2047 Male, age 72, unknown 72.4
2750 Male, age 76, both hemispheres 66.2
1828 Male, age 53, unknown 62.0
2016 Female, age 72, unknown 59.4
Inferior colliculus
nTPM: 66.8
2849 Male, age 72, unknown 76.6
1848 Female, age 42, unknown 68.6
2097 Female, age 72, unknown 63.6
1890 Male, age 53, unknown 58.3
Median raphe nucleus
nTPM: 76.9
2220 Male, age 76, midline 76.9
Periaquaductal grey, anterior
nTPM: 76.4
1947 Male, age 18, unknown 80.6
1795 Male, age 51, unknown 77.2
2502 Female, age 75, unknown 71.5
Periaquaductal grey, dorsal
nTPM: 67.3
2850 Male, age 76, both hemispheres 73.4
1840 Male, age 53, unknown 72.2
1831 Male, age 72, unknown 62.6
2464 Female, age 72, unknown 61.1
Periaquaductal grey, lateral
nTPM: 68.7
2140 Male, age 76, both hemispheres 73.3
2053 Male, age 18, unknown 66.3
2272 Male, age 74, both hemispheres 66.3
Pretectal area
nTPM: 70.3
1816 Male, age 51, unknown 77.2
2825 Male, age 18, unknown 73.5
2667 Female, age 75, unknown 72.6
2407 Male, age 75, both hemispheres 72.3
2007 Male, age 72, unknown 71.6
1817 Female, age 42, unknown 71.4
2224 Female, age 72, unknown 70.5
1944 Female, age 72, unknown 69.5
1815 Male, age 53, unknown 69.2
2316 Male, age 76, right hemisphere 63.5
2273 Male, age 74, both hemispheres 61.6
Red nucleus
nTPM: 61.5
2584 Male, age 75, left hemisphere 70.7
2725 Female, age 75, unknown 65.8
2785 Male, age 18, unknown 63.8
1821 Female, age 72, unknown 63.3
2769 Male, age 72, unknown 61.1
2227 Male, age 72, unknown 60.1
1954 Female, age 42, unknown 59.7
2588 Male, age 74, left hemisphere 59.6
2503 Female, age 72, unknown 59.2
1904 Male, age 53, unknown 58.9
1865 Male, age 51, unknown 58.3
2823 Male, age 76, right hemisphere 57.3
Substantia nigra
nTPM: 71.0
1916 Female, age 42, unknown 87.5
1941 Male, age 53, unknown 77.1
2665 Male, age 74, both hemispheres 74.5
2583 Male, age 75, right hemisphere 72.7
1889 Female, age 72, unknown 71.5
1851 Male, age 51, unknown 70.7
2699 Male, age 18, unknown 69.9
2590 Female, age 75, unknown 66.0
2241 Male, age 72, unknown 64.7
2409 Female, age 72, unknown 55.4
Superior colliculus
nTPM: 68.4
2664 Male, age 75, both hemispheres 78.9
1796 Male, age 53, unknown 76.2
2261 Male, age 18, unknown 75.7
1839 Male, age 51, unknown 72.9
2668 Female, age 75, unknown 69.9
2087 Female, age 72, unknown 66.4
1895 Male, age 76, right hemisphere 63.6
2587 Male, age 74, left hemisphere 61.8
1913 Female, age 42, unknown 61.4
1995 Male, age 72, unknown 56.8
Ventral tegmental area
nTPM: 69.4
2218 Male, age 76, both hemispheres 75.9
2410 Female, age 72, unknown 71.2
1915 Female, age 42, unknown 70.6
2223 Female, age 72, unknown 67.5
1942 Male, age 51, unknown 65.8
2021 Male, age 53, unknown 65.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.5
Samples: 139

Max nTPM: 62.7
Min nTPM: 28.3
Std nTPM: 6.1
Median nTPM: 38.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 62.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 55.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 55.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 52.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 51.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 51.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 51.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 51.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 50.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 50.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 49.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.5
FF:10158-103A5 76 years, female 43.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 59.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.7
Samples: 4

Max nTPM: 75.1
Min nTPM: 41.8
Sample A Female 70.4
Sample B Female 47.6
Sample C Male 75.1
Sample D Male 41.8
Midbrain
nTPM: 58.1
Samples: 4

Max nTPM: 61.5
Min nTPM: 51.6
Sample A Female 58.4
Sample B Female 51.6
Sample C Male 61.5
Sample D Male 60.9
Periaqueductal gray
nTPM: 51.0
Samples: 3

Max nTPM: 56.9
Min nTPM: 46.3
Sample B Female 46.3
Sample C Male 56.9
Sample D Male 49.7
Superior colliculi
nTPM: 59.1
Samples: 4

Max nTPM: 65.6
Min nTPM: 46.9
Sample A Female 65.6
Sample B Female 46.9
Sample C Male 59.0
Sample D Male 64.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.2
Samples: 4

Max nTPM: 29.2
Min nTPM: 26.1
Sample A Male 26.1
Sample B Male 26.6
Sample C Female 29.2
Sample D Female 27.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
583864 Antisense, RP_040831_01_C03, Mouse strain C57BL/6J (56 days, male) 1.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org