MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:229.9 nTPM
HPA Brain:134.6 nTPM
GTEx:229.9 nTPM
FANTOM5:485.0 Scaled Tags Per Million
Pig:287.0 nTPM
Mouse:191.8 nTPM
Allen mouse:8.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 134.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 104.7
1830 Male, age 51, unknown 128.2
2411 Female, age 72, unknown 127.0
2019 Male, age 18, unknown 124.4
1870 Female, age 42, unknown 117.4
1833 Male, age 53, unknown 115.6
2828 Female, age 72, unknown 103.3
2666 Male, age 74, left hemisphere 94.5
2586 Male, age 75, left hemisphere 83.1
1827 Male, age 72, unknown 81.4
2219 Male, age 76, both hemispheres 71.8
Dorsal raphe nucleus
nTPM: 82.2
2750 Male, age 76, both hemispheres 130.2
1828 Male, age 53, unknown 82.5
2016 Female, age 72, unknown 79.8
2047 Male, age 72, unknown 63.0
2298 Female, age 72, unknown 55.4
Inferior colliculus
nTPM: 71.8
1890 Male, age 53, unknown 74.6
2849 Male, age 72, unknown 74.4
1848 Female, age 42, unknown 73.9
2097 Female, age 72, unknown 64.4
Median raphe nucleus
nTPM: 79.5
2220 Male, age 76, midline 79.5
Periaquaductal grey, anterior
nTPM: 62.7
2502 Female, age 75, unknown 70.3
1947 Male, age 18, unknown 64.9
1795 Male, age 51, unknown 52.7
Periaquaductal grey, dorsal
nTPM: 58.2
2464 Female, age 72, unknown 78.6
1831 Male, age 72, unknown 62.3
2850 Male, age 76, both hemispheres 48.3
1840 Male, age 53, unknown 43.6
Periaquaductal grey, lateral
nTPM: 63.6
2272 Male, age 74, both hemispheres 77.7
2053 Male, age 18, unknown 69.6
2140 Male, age 76, both hemispheres 43.4
Pretectal area
nTPM: 73.7
1815 Male, age 53, unknown 93.8
2407 Male, age 75, both hemispheres 87.4
1817 Female, age 42, unknown 86.1
2007 Male, age 72, unknown 82.3
2316 Male, age 76, right hemisphere 75.1
2273 Male, age 74, both hemispheres 72.1
2825 Male, age 18, unknown 71.9
2667 Female, age 75, unknown 70.0
2224 Female, age 72, unknown 59.4
1944 Female, age 72, unknown 57.8
1816 Male, age 51, unknown 54.5
Red nucleus
nTPM: 134.6
1865 Male, age 51, unknown 160.8
2823 Male, age 76, right hemisphere 158.3
1821 Female, age 72, unknown 153.2
1904 Male, age 53, unknown 152.7
2769 Male, age 72, unknown 145.3
2227 Male, age 72, unknown 143.0
2785 Male, age 18, unknown 128.9
2503 Female, age 72, unknown 127.5
1954 Female, age 42, unknown 127.4
2588 Male, age 74, left hemisphere 118.9
2584 Male, age 75, left hemisphere 103.1
2725 Female, age 75, unknown 95.8
Substantia nigra
nTPM: 86.5
2583 Male, age 75, right hemisphere 109.6
1851 Male, age 51, unknown 97.1
2590 Female, age 75, unknown 95.6
1941 Male, age 53, unknown 94.4
1889 Female, age 72, unknown 91.1
2699 Male, age 18, unknown 87.8
1916 Female, age 42, unknown 81.2
2409 Female, age 72, unknown 72.8
2665 Male, age 74, both hemispheres 72.2
2241 Male, age 72, unknown 62.9
Superior colliculus
nTPM: 89.9
1913 Female, age 42, unknown 123.1
1995 Male, age 72, unknown 122.4
2587 Male, age 74, left hemisphere 104.4
2668 Female, age 75, unknown 99.3
1895 Male, age 76, right hemisphere 96.1
1839 Male, age 51, unknown 92.4
1796 Male, age 53, unknown 71.5
2664 Male, age 75, both hemispheres 67.3
2261 Male, age 18, unknown 62.1
2087 Female, age 72, unknown 60.7
Ventral tegmental area
nTPM: 96.2
2223 Female, age 72, unknown 147.5
2410 Female, age 72, unknown 114.0
2218 Male, age 76, both hemispheres 83.4
1942 Male, age 51, unknown 80.0
1915 Female, age 42, unknown 79.3
2021 Male, age 53, unknown 73.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 229.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 229.9
Samples: 139

Max nTPM: 583.6
Min nTPM: 102.6
Std nTPM: 85.5
Median nTPM: 212.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 583.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 527.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 492.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 481.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 410.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 400.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 388.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 382.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 380.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 374.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 359.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 485.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 485.0
FF:10158-103A5 76 years, female 485.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 287.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 254.7
Samples: 4

Max nTPM: 327.4
Min nTPM: 166.6
Sample A Female 292.4
Sample B Female 166.6
Sample C Male 232.2
Sample D Male 327.4
Midbrain
nTPM: 287.0
Samples: 4

Max nTPM: 565.9
Min nTPM: 166.2
Sample A Female 565.9
Sample B Female 228.3
Sample C Male 187.7
Sample D Male 166.2
Periaqueductal gray
nTPM: 178.9
Samples: 3

Max nTPM: 196.3
Min nTPM: 169.2
Sample B Female 196.3
Sample C Male 171.3
Sample D Male 169.2
Superior colliculi
nTPM: 232.1
Samples: 4

Max nTPM: 294.4
Min nTPM: 130.0
Sample A Female 294.4
Sample B Female 130.0
Sample C Male 261.6
Sample D Male 242.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 191.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 191.8
Samples: 4

Max nTPM: 204.4
Min nTPM: 168.4
Sample A Male 192.3
Sample B Male 168.4
Sample C Female 201.9
Sample D Female 204.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.3
75651224 Antisense, RP_060518_01_D02, Mouse strain C57BL/6J (56 days, male) 9.2
74990520 Antisense, RP_060410_01_C02, Mouse strain C57BL/6J (56 days, male) 7.4

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