MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:88.9 nTPM
HPA Brain:164.4 nTPM
GTEx:88.9 nTPM
FANTOM5:63.8 Scaled Tags Per Million
Pig:71.8 nTPM
Mouse:46.2 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 164.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 75.1
1827 Male, age 72, unknown 110.7
2586 Male, age 75, left hemisphere 97.4
2828 Female, age 72, unknown 96.9
1870 Female, age 42, unknown 94.8
2666 Male, age 74, left hemisphere 86.2
1833 Male, age 53, unknown 66.5
2411 Female, age 72, unknown 62.4
1830 Male, age 51, unknown 61.2
2019 Male, age 18, unknown 42.7
2219 Male, age 76, both hemispheres 32.6
Dorsal raphe nucleus
nTPM: 164.4
2047 Male, age 72, unknown 245.4
2298 Female, age 72, unknown 206.8
2016 Female, age 72, unknown 156.7
1828 Male, age 53, unknown 112.6
2750 Male, age 76, both hemispheres 100.3
Inferior colliculus
nTPM: 77.5
1848 Female, age 42, unknown 93.2
2849 Male, age 72, unknown 87.9
2097 Female, age 72, unknown 73.3
1890 Male, age 53, unknown 55.7
Median raphe nucleus
nTPM: 146.7
2220 Male, age 76, midline 146.7
Periaquaductal grey, anterior
nTPM: 104.6
1795 Male, age 51, unknown 138.3
1947 Male, age 18, unknown 111.2
2502 Female, age 75, unknown 64.2
Periaquaductal grey, dorsal
nTPM: 127.1
2850 Male, age 76, both hemispheres 154.7
1840 Male, age 53, unknown 144.7
1831 Male, age 72, unknown 121.9
2464 Female, age 72, unknown 87.2
Periaquaductal grey, lateral
nTPM: 145.2
2272 Male, age 74, both hemispheres 162.0
2053 Male, age 18, unknown 142.7
2140 Male, age 76, both hemispheres 131.0
Pretectal area
nTPM: 98.8
2224 Female, age 72, unknown 151.2
2273 Male, age 74, both hemispheres 140.5
2825 Male, age 18, unknown 133.9
1816 Male, age 51, unknown 101.5
2316 Male, age 76, right hemisphere 88.1
2407 Male, age 75, both hemispheres 87.3
2667 Female, age 75, unknown 86.5
1944 Female, age 72, unknown 85.4
1815 Male, age 53, unknown 79.9
1817 Female, age 42, unknown 73.5
2007 Male, age 72, unknown 58.9
Red nucleus
nTPM: 57.7
2725 Female, age 75, unknown 123.0
2823 Male, age 76, right hemisphere 78.3
2503 Female, age 72, unknown 74.8
2584 Male, age 75, left hemisphere 60.8
2588 Male, age 74, left hemisphere 55.5
1821 Female, age 72, unknown 51.8
2785 Male, age 18, unknown 46.0
2769 Male, age 72, unknown 45.7
2227 Male, age 72, unknown 43.5
1865 Male, age 51, unknown 39.2
1954 Female, age 42, unknown 38.4
1904 Male, age 53, unknown 35.0
Substantia nigra
nTPM: 72.9
2409 Female, age 72, unknown 95.9
2590 Female, age 75, unknown 80.2
1941 Male, age 53, unknown 79.3
1889 Female, age 72, unknown 77.0
2699 Male, age 18, unknown 76.5
1851 Male, age 51, unknown 76.4
2583 Male, age 75, right hemisphere 69.8
2241 Male, age 72, unknown 64.0
1916 Female, age 42, unknown 60.2
2665 Male, age 74, both hemispheres 49.8
Superior colliculus
nTPM: 86.1
1796 Male, age 53, unknown 115.3
2664 Male, age 75, both hemispheres 111.6
2261 Male, age 18, unknown 98.2
2587 Male, age 74, left hemisphere 95.2
1839 Male, age 51, unknown 91.0
2087 Female, age 72, unknown 80.0
1995 Male, age 72, unknown 78.8
1913 Female, age 42, unknown 76.7
1895 Male, age 76, right hemisphere 58.2
2668 Female, age 75, unknown 56.2
Ventral tegmental area
nTPM: 113.1
2021 Male, age 53, unknown 214.6
1915 Female, age 42, unknown 132.0
1942 Male, age 51, unknown 96.6
2223 Female, age 72, unknown 94.1
2218 Male, age 76, both hemispheres 71.9
2410 Female, age 72, unknown 69.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 88.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 88.9
Samples: 139

Max nTPM: 300.2
Min nTPM: 18.3
Std nTPM: 50.8
Median nTPM: 79.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 300.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 257.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 255.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 251.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 244.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 242.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 232.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 225.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 188.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 172.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 159.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 63.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 63.8
FF:10158-103A5 76 years, female 63.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 71.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 52.7
Samples: 4

Max nTPM: 75.7
Min nTPM: 30.8
Sample A Female 64.2
Sample B Female 40.2
Sample C Male 75.7
Sample D Male 30.8
Midbrain
nTPM: 58.2
Samples: 4

Max nTPM: 86.8
Min nTPM: 31.3
Sample A Female 31.3
Sample B Female 39.7
Sample C Male 86.8
Sample D Male 75.1
Periaqueductal gray
nTPM: 71.8
Samples: 3

Max nTPM: 123.3
Min nTPM: 40.3
Sample B Female 40.3
Sample C Male 123.3
Sample D Male 51.9
Superior colliculi
nTPM: 50.7
Samples: 4

Max nTPM: 65.5
Min nTPM: 40.8
Sample A Female 55.2
Sample B Female 41.4
Sample C Male 65.5
Sample D Male 40.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.2
Samples: 4

Max nTPM: 47.4
Min nTPM: 43.7
Sample A Male 43.7
Sample B Male 47.4
Sample C Female 47.4
Sample D Female 46.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
69736456 Antisense, RP_050503_04_G12, Mouse strain C57BL/6J (56 days, male) 0.6
71670489 Antisense, RP_050503_04_G12, Mouse strain C57BL/6J (56 days, male) 0.4

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