MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:74.7 nTPM
HPA Brain:65.1 nTPM
GTEx:74.7 nTPM
FANTOM5:73.5 Scaled Tags Per Million
Pig:118.3 nTPM
Mouse:155.8 nTPM
Allen mouse:6.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 65.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.0
2666 Male, age 74, left hemisphere 68.6
2411 Female, age 72, unknown 67.3
1827 Male, age 72, unknown 61.5
1870 Female, age 42, unknown 54.8
2219 Male, age 76, both hemispheres 52.3
2019 Male, age 18, unknown 50.5
1833 Male, age 53, unknown 49.6
2828 Female, age 72, unknown 47.0
1830 Male, age 51, unknown 45.7
2586 Male, age 75, left hemisphere 42.4
Dorsal raphe nucleus
nTPM: 61.6
2298 Female, age 72, unknown 72.4
2047 Male, age 72, unknown 66.7
1828 Male, age 53, unknown 60.1
2750 Male, age 76, both hemispheres 59.7
2016 Female, age 72, unknown 49.2
Inferior colliculus
nTPM: 51.5
2097 Female, age 72, unknown 58.2
1848 Female, age 42, unknown 52.2
1890 Male, age 53, unknown 51.3
2849 Male, age 72, unknown 44.3
Median raphe nucleus
nTPM: 59.8
2220 Male, age 76, midline 59.8
Periaquaductal grey, anterior
nTPM: 52.9
1947 Male, age 18, unknown 70.2
1795 Male, age 51, unknown 50.4
2502 Female, age 75, unknown 38.1
Periaquaductal grey, dorsal
nTPM: 51.2
1831 Male, age 72, unknown 52.8
2464 Female, age 72, unknown 52.7
2850 Male, age 76, both hemispheres 52.4
1840 Male, age 53, unknown 46.7
Periaquaductal grey, lateral
nTPM: 52.7
2140 Male, age 76, both hemispheres 58.4
2053 Male, age 18, unknown 55.5
2272 Male, age 74, both hemispheres 44.3
Pretectal area
nTPM: 56.4
1944 Female, age 72, unknown 78.8
1816 Male, age 51, unknown 68.1
1817 Female, age 42, unknown 62.0
2224 Female, age 72, unknown 59.6
2007 Male, age 72, unknown 58.6
1815 Male, age 53, unknown 55.0
2825 Male, age 18, unknown 51.0
2273 Male, age 74, both hemispheres 49.1
2667 Female, age 75, unknown 47.9
2316 Male, age 76, right hemisphere 45.9
2407 Male, age 75, both hemispheres 44.6
Red nucleus
nTPM: 48.4
2584 Male, age 75, left hemisphere 64.4
1821 Female, age 72, unknown 54.8
2823 Male, age 76, right hemisphere 53.3
2725 Female, age 75, unknown 52.0
1904 Male, age 53, unknown 51.1
1954 Female, age 42, unknown 50.6
2785 Male, age 18, unknown 48.1
2769 Male, age 72, unknown 46.6
1865 Male, age 51, unknown 44.9
2503 Female, age 72, unknown 40.4
2227 Male, age 72, unknown 39.0
2588 Male, age 74, left hemisphere 35.9
Substantia nigra
nTPM: 65.1
2241 Male, age 72, unknown 83.9
1941 Male, age 53, unknown 77.4
1916 Female, age 42, unknown 74.5
2590 Female, age 75, unknown 73.4
1851 Male, age 51, unknown 67.0
1889 Female, age 72, unknown 64.7
2409 Female, age 72, unknown 56.7
2583 Male, age 75, right hemisphere 56.1
2699 Male, age 18, unknown 49.0
2665 Male, age 74, both hemispheres 48.2
Superior colliculus
nTPM: 54.8
2668 Female, age 75, unknown 67.9
2087 Female, age 72, unknown 66.3
1796 Male, age 53, unknown 57.8
2261 Male, age 18, unknown 56.2
1839 Male, age 51, unknown 55.9
2587 Male, age 74, left hemisphere 55.0
1895 Male, age 76, right hemisphere 54.0
1913 Female, age 42, unknown 47.1
2664 Male, age 75, both hemispheres 44.1
1995 Male, age 72, unknown 43.9
Ventral tegmental area
nTPM: 60.0
2410 Female, age 72, unknown 81.1
1915 Female, age 42, unknown 64.3
1942 Male, age 51, unknown 56.8
2218 Male, age 76, both hemispheres 54.9
2021 Male, age 53, unknown 52.1
2223 Female, age 72, unknown 51.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 74.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 74.7
Samples: 139

Max nTPM: 177.1
Min nTPM: 30.6
Std nTPM: 24.6
Median nTPM: 70.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 177.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 141.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 133.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 133.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 126.2
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 125.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 125.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 123.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 119.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 119.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 119.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 73.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 73.5
FF:10158-103A5 76 years, female 73.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 118.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 96.6
Samples: 4

Max nTPM: 151.6
Min nTPM: 72.4
Sample A Female 82.0
Sample B Female 151.6
Sample C Male 72.4
Sample D Male 80.3
Midbrain
nTPM: 73.0
Samples: 4

Max nTPM: 96.0
Min nTPM: 49.2
Sample A Female 91.7
Sample B Female 96.0
Sample C Male 49.2
Sample D Male 55.1
Periaqueductal gray
nTPM: 63.3
Samples: 3

Max nTPM: 76.8
Min nTPM: 53.6
Sample B Female 76.8
Sample C Male 59.4
Sample D Male 53.6
Superior colliculi
nTPM: 118.3
Samples: 4

Max nTPM: 218.6
Min nTPM: 60.5
Sample A Female 130.9
Sample B Female 218.6
Sample C Male 60.5
Sample D Male 63.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 155.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 155.8
Samples: 4

Max nTPM: 160.4
Min nTPM: 150.0
Sample A Male 157.2
Sample B Male 160.4
Sample C Female 155.5
Sample D Female 150.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.8
69526952 Antisense, RP_050421_02_A03, Mouse strain C57BL/6J (56 days, male) 6.8

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