MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.2 nTPM
HPA Brain:41.1 nTPM
GTEx:20.2 nTPM
FANTOM5:14.9 Scaled Tags Per Million
Pig:69.2 nTPM
Mouse:85.8 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.0
1827 Male, age 72, unknown 43.0
2586 Male, age 75, left hemisphere 41.4
2019 Male, age 18, unknown 39.0
2219 Male, age 76, both hemispheres 38.2
2411 Female, age 72, unknown 38.2
2666 Male, age 74, left hemisphere 31.9
2828 Female, age 72, unknown 31.2
1870 Female, age 42, unknown 26.5
1833 Male, age 53, unknown 25.7
1830 Male, age 51, unknown 24.5
Dorsal raphe nucleus
nTPM: 35.3
2298 Female, age 72, unknown 50.8
2047 Male, age 72, unknown 34.9
1828 Male, age 53, unknown 34.2
2750 Male, age 76, both hemispheres 31.0
2016 Female, age 72, unknown 25.6
Inferior colliculus
nTPM: 39.4
2097 Female, age 72, unknown 57.8
1890 Male, age 53, unknown 37.5
1848 Female, age 42, unknown 35.4
2849 Male, age 72, unknown 27.1
Median raphe nucleus
nTPM: 40.3
2220 Male, age 76, midline 40.3
Periaquaductal grey, anterior
nTPM: 39.1
2502 Female, age 75, unknown 43.8
1947 Male, age 18, unknown 37.0
1795 Male, age 51, unknown 36.4
Periaquaductal grey, dorsal
nTPM: 30.5
1840 Male, age 53, unknown 32.0
1831 Male, age 72, unknown 31.3
2464 Female, age 72, unknown 30.6
2850 Male, age 76, both hemispheres 28.3
Periaquaductal grey, lateral
nTPM: 29.0
2140 Male, age 76, both hemispheres 31.2
2053 Male, age 18, unknown 30.4
2272 Male, age 74, both hemispheres 25.4
Pretectal area
nTPM: 41.1
1816 Male, age 51, unknown 60.2
1944 Female, age 72, unknown 58.1
2007 Male, age 72, unknown 52.7
1817 Female, age 42, unknown 50.8
1815 Male, age 53, unknown 41.1
2667 Female, age 75, unknown 40.3
2224 Female, age 72, unknown 35.6
2316 Male, age 76, right hemisphere 30.2
2825 Male, age 18, unknown 29.9
2273 Male, age 74, both hemispheres 29.1
2407 Male, age 75, both hemispheres 24.6
Red nucleus
nTPM: 31.5
1821 Female, age 72, unknown 43.0
2785 Male, age 18, unknown 37.2
1954 Female, age 42, unknown 35.9
2725 Female, age 75, unknown 31.8
2227 Male, age 72, unknown 30.3
2769 Male, age 72, unknown 30.3
1904 Male, age 53, unknown 29.4
2503 Female, age 72, unknown 29.2
1865 Male, age 51, unknown 28.8
2823 Male, age 76, right hemisphere 27.9
2584 Male, age 75, left hemisphere 27.5
2588 Male, age 74, left hemisphere 26.2
Substantia nigra
nTPM: 38.2
1941 Male, age 53, unknown 54.0
1916 Female, age 42, unknown 49.1
1889 Female, age 72, unknown 47.6
1851 Male, age 51, unknown 41.7
2241 Male, age 72, unknown 39.8
2409 Female, age 72, unknown 34.3
2665 Male, age 74, both hemispheres 34.2
2590 Female, age 75, unknown 29.2
2699 Male, age 18, unknown 26.4
2583 Male, age 75, right hemisphere 26.2
Superior colliculus
nTPM: 35.9
2087 Female, age 72, unknown 49.4
2261 Male, age 18, unknown 46.4
1796 Male, age 53, unknown 42.1
2668 Female, age 75, unknown 38.0
1895 Male, age 76, right hemisphere 37.6
2664 Male, age 75, both hemispheres 33.2
1839 Male, age 51, unknown 31.4
1913 Female, age 42, unknown 31.3
1995 Male, age 72, unknown 26.9
2587 Male, age 74, left hemisphere 22.6
Ventral tegmental area
nTPM: 36.1
2410 Female, age 72, unknown 48.1
2218 Male, age 76, both hemispheres 41.7
1915 Female, age 42, unknown 39.2
1942 Male, age 51, unknown 35.8
2223 Female, age 72, unknown 26.1
2021 Male, age 53, unknown 25.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.2
Samples: 139

Max nTPM: 73.2
Min nTPM: 4.8
Std nTPM: 10.4
Median nTPM: 18.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 73.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 56.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 52.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 47.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 46.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 39.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 37.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 36.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 35.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 34.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 34.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.9
FF:10158-103A5 76 years, female 14.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 69.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 42.7
Samples: 4

Max nTPM: 55.0
Min nTPM: 27.4
Sample A Female 52.8
Sample B Female 35.5
Sample C Male 55.0
Sample D Male 27.4
Midbrain
nTPM: 61.0
Samples: 4

Max nTPM: 104.7
Min nTPM: 28.2
Sample A Female 28.2
Sample B Female 39.2
Sample C Male 104.7
Sample D Male 71.9
Periaqueductal gray
nTPM: 39.2
Samples: 3

Max nTPM: 46.3
Min nTPM: 31.6
Sample B Female 39.8
Sample C Male 46.3
Sample D Male 31.6
Superior colliculi
nTPM: 69.2
Samples: 4

Max nTPM: 89.6
Min nTPM: 59.7
Sample A Female 64.3
Sample B Female 59.7
Sample C Male 89.6
Sample D Male 63.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 85.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 85.8
Samples: 4

Max nTPM: 87.3
Min nTPM: 82.4
Sample A Male 87.3
Sample B Male 82.4
Sample C Female 86.3
Sample D Female 87.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
1456 Antisense, RP_040428_01_G03, Mouse strain C57BL/6J (56 days, male) 0.8
1457 Antisense, RP_040428_01_G03, Mouse strain C57BL/6J (56 days, male) 0.8

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