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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
61.8
nTPM
Monaco:
215.6
nTPM
Schmiedel:
77.9
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
61.8
HPA sample
nTPM
gdT-cell nTPM: 59.0
Samples: 6
Max nTPM: 72.9
Min nTPM: 45.5
P10809_1007
45.5
P10809_1022
71.4
P10809_1041
72.9
P10809_1060
47.8
P10809_1077
66.7
P10809_1098
49.4
MAIT T-cell nTPM: 58.2
Samples: 6
Max nTPM: 86.8
Min nTPM: 40.8
P10809_1006
55.5
P10809_1024
86.8
P10809_1043
55.2
P10809_1062
46.1
P10809_1083
64.6
P10809_1097
40.8
Memory CD4 T-cell nTPM: 28.7
Samples: 6
Max nTPM: 38.8
Min nTPM: 18.6
P10809_1014
18.6
P10809_1026
28.8
P10809_1045
28.9
P10809_1064
36.7
P10809_1086
38.8
P10809_1113
20.1
Memory CD8 T-cell nTPM: 61.8
Samples: 5
Max nTPM: 72.5
Min nTPM: 45.7
P10809_1012
45.7
P10809_1027
72.5
P10809_1046
68.8
P10809_1065
63.5
P10809_1111
58.6
Naive CD4 T-cell nTPM: 14.1
Samples: 6
Max nTPM: 34.8
Min nTPM: 8.4
P10809_1015
8.4
P10809_1030
10.4
P10809_1049
11.7
P10809_1068
9.9
P10809_1085
34.8
P10809_1112
9.3
Naive CD8 T-cell nTPM: 37.5
Samples: 6
Max nTPM: 64.8
Min nTPM: 12.1
P10809_1016
12.1
P10809_1031
23.6
P10809_1050
50.1
P10809_1069
53.3
P10809_1087
64.8
P10809_1110
21.2
T-reg nTPM: 36.4
Samples: 6
Max nTPM: 49.4
Min nTPM: 20.4
P10809_1018
32.5
P10809_1037
20.4
P10809_1056
49.4
P10809_1075
44.5
P10809_1094
29.9
P10809_1106
41.6
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
215.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 117.3
Samples: 4
Max nTPM: 145.1
Min nTPM: 96.9
RHH5202_R3573
106.4
RHH5230_R3602
96.9
RHH5259_R3631
120.7
RHH5288_R3660
145.1
Effector memory CD8 T-cell nTPM: 195.5
Samples: 4
Max nTPM: 230.8
Min nTPM: 143.9
RHH5203_R3574
217.8
RHH5231_R3603
230.8
RHH5260_R3632
189.4
RHH5289_R3661
143.9
MAIT T-cell nTPM: 203.3
Samples: 4
Max nTPM: 227.5
Min nTPM: 190.4
RHH5233_R3605
197.3
RHH5205_R3576
227.5
RHH5262_R3634
190.4
RHH5297_R3663
197.9
Memory CD4 T-cell TFH nTPM: 70.9
Samples: 4
Max nTPM: 79.7
Min nTPM: 55.1
RHH5300_R3666
74.7
RHH5236_R3608
73.9
RHH5265_R3637
79.7
RHH5208_R3579
55.1
Memory CD4 T-cell Th1 nTPM: 79.5
Samples: 4
Max nTPM: 84.8
Min nTPM: 70.7
RHH5210_R3581
70.7
RHH5302_R3668
82.3
RHH5238_R3610
80.0
RHH5267_R3639
84.8
Memory CD4 T-cell Th1/Th17 nTPM: 97.9
Samples: 4
Max nTPM: 122.3
Min nTPM: 67.5
RHH5303_R3669
67.5
RHH5211_R3582
113.8
RHH5239_R3611
122.3
RHH5268_R3640
88.1
Memory CD4 T-cell Th17 nTPM: 80.2
Samples: 4
Max nTPM: 82.6
Min nTPM: 78.5
RHH5304_R3670
80.0
RHH5212_R3583
79.8
RHH5240_R3612
78.5
RHH5269_R3641
82.6
Memory CD4 T-cell Th2 nTPM: 55.2
Samples: 4
Max nTPM: 87.1
Min nTPM: 35.6
RHH5305_R3671
46.2
RHH5213_R3584
52.0
RHH5241_R3613
35.6
RHH5270_R3642
87.1
Naive CD4 T-cell nTPM: 37.9
Samples: 4
Max nTPM: 43.7
Min nTPM: 30.9
RHH5306_R3672
30.9
RHH5214_R3585
43.7
RHH5242_R3614
43.1
RHH5271_R3643
34.0
Naive CD8 T-cell nTPM: 52.3
Samples: 4
Max nTPM: 70.1
Min nTPM: 39.8
RHH5201_R3572
40.6
RHH5229_R3601
70.1
RHH5258_R3630
58.8
RHH5287_R3659
39.8
Non-Vd2 gdTCR nTPM: 205.8
Samples: 4
Max nTPM: 233.8
Min nTPM: 161.0
RHH5235_R3607
233.8
RHH5264_R3636
205.7
RHH5207_R3578
161.0
RHH5299_R3665
222.8
T-reg nTPM: 62.7
Samples: 4
Max nTPM: 90.3
Min nTPM: 49.8
RHH5301_R3667
55.5
RHH5237_R3609
90.3
RHH5266_R3638
49.8
RHH5209_R3580
55.1
Terminal effector memory CD4 T-cell nTPM: 190.9
Samples: 2
Max nTPM: 246.7
Min nTPM: 135.1
RHH5243_R3615
246.7
RHH5272_R3644
135.1
Terminal effector memory CD8 T-cell nTPM: 215.6
Samples: 4
Max nTPM: 245.1
Min nTPM: 189.8
RHH5232_R3604
221.3
RHH5204_R3575
245.1
RHH5261_R3633
206.3
RHH5296_R3662
189.8
Vd2 gdTCR nTPM: 209.8
Samples: 4
Max nTPM: 246.2
Min nTPM: 185.1
RHH5234_R3606
221.2
RHH5206_R3577
186.5
RHH5263_R3635
246.2
RHH5298_R3664
185.1
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
