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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
25.2
nTPM
Monaco:
45.2
nTPM
Schmiedel:
38.3
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
25.2
HPA sample
nTPM
gdT-cell nTPM: 2.3
Samples: 6
Max nTPM: 3.6
Min nTPM: 0.1
P10809_1007
1.0
P10809_1022
3.2
P10809_1041
3.6
P10809_1060
2.2
P10809_1077
3.4
P10809_1098
0.1
MAIT T-cell nTPM: 2.5
Samples: 6
Max nTPM: 4.2
Min nTPM: 0.2
P10809_1006
1.5
P10809_1024
2.6
P10809_1043
4.1
P10809_1062
2.6
P10809_1083
4.2
P10809_1097
0.2
Memory CD4 T-cell nTPM: 11.4
Samples: 6
Max nTPM: 13.1
Min nTPM: 8.9
P10809_1014
10.7
P10809_1026
12.8
P10809_1045
12.0
P10809_1064
8.9
P10809_1086
11.1
P10809_1113
13.1
Memory CD8 T-cell nTPM: 4.0
Samples: 5
Max nTPM: 5.5
Min nTPM: 2.5
P10809_1012
5.5
P10809_1027
4.7
P10809_1046
4.0
P10809_1065
2.5
P10809_1111
3.4
Naive CD4 T-cell nTPM: 12.5
Samples: 6
Max nTPM: 14.3
Min nTPM: 11.0
P10809_1015
11.9
P10809_1030
14.3
P10809_1049
11.0
P10809_1068
13.4
P10809_1085
13.3
P10809_1112
11.2
Naive CD8 T-cell nTPM: 4.5
Samples: 6
Max nTPM: 5.9
Min nTPM: 3.5
P10809_1016
4.5
P10809_1031
5.9
P10809_1050
5.0
P10809_1069
4.3
P10809_1087
3.7
P10809_1110
3.5
T-reg nTPM: 25.2
Samples: 6
Max nTPM: 36.0
Min nTPM: 15.2
P10809_1018
15.2
P10809_1037
32.4
P10809_1056
16.9
P10809_1075
24.6
P10809_1094
36.0
P10809_1106
26.2
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
45.2
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 28.4
Samples: 4
Max nTPM: 33.2
Min nTPM: 26.3
RHH5202_R3573
33.2
RHH5230_R3602
26.4
RHH5259_R3631
26.3
RHH5288_R3660
27.8
Effector memory CD8 T-cell nTPM: 17.4
Samples: 4
Max nTPM: 21.9
Min nTPM: 13.6
RHH5203_R3574
17.5
RHH5231_R3603
13.6
RHH5260_R3632
16.7
RHH5289_R3661
21.9
MAIT T-cell nTPM: 6.9
Samples: 4
Max nTPM: 8.5
Min nTPM: 4.8
RHH5233_R3605
6.0
RHH5205_R3576
8.3
RHH5262_R3634
8.5
RHH5297_R3663
4.8
Memory CD4 T-cell TFH nTPM: 45.2
Samples: 4
Max nTPM: 61.1
Min nTPM: 25.5
RHH5300_R3666
25.5
RHH5236_R3608
50.1
RHH5265_R3637
44.0
RHH5208_R3579
61.1
Memory CD4 T-cell Th1 nTPM: 31.4
Samples: 4
Max nTPM: 35.7
Min nTPM: 26.6
RHH5210_R3581
31.1
RHH5302_R3668
32.3
RHH5238_R3610
26.6
RHH5267_R3639
35.7
Memory CD4 T-cell Th1/Th17 nTPM: 31.7
Samples: 4
Max nTPM: 36.0
Min nTPM: 28.3
RHH5303_R3669
28.3
RHH5211_R3582
30.9
RHH5239_R3611
36.0
RHH5268_R3640
31.7
Memory CD4 T-cell Th17 nTPM: 31.7
Samples: 4
Max nTPM: 40.4
Min nTPM: 25.3
RHH5304_R3670
25.3
RHH5212_R3583
26.6
RHH5240_R3612
34.4
RHH5269_R3641
40.4
Memory CD4 T-cell Th2 nTPM: 31.2
Samples: 4
Max nTPM: 42.1
Min nTPM: 22.8
RHH5305_R3671
25.9
RHH5213_R3584
22.8
RHH5241_R3613
42.1
RHH5270_R3642
34.1
Naive CD4 T-cell nTPM: 28.6
Samples: 4
Max nTPM: 39.6
Min nTPM: 22.7
RHH5306_R3672
24.9
RHH5214_R3585
22.7
RHH5242_R3614
39.6
RHH5271_R3643
27.2
Naive CD8 T-cell nTPM: 26.3
Samples: 4
Max nTPM: 32.4
Min nTPM: 19.6
RHH5201_R3572
31.7
RHH5229_R3601
19.6
RHH5258_R3630
21.4
RHH5287_R3659
32.4
Non-Vd2 gdTCR nTPM: 3.9
Samples: 4
Max nTPM: 5.7
Min nTPM: 1.1
RHH5235_R3607
5.7
RHH5264_R3636
4.0
RHH5207_R3578
1.1
RHH5299_R3665
4.6
T-reg nTPM: 33.1
Samples: 4
Max nTPM: 44.9
Min nTPM: 25.4
RHH5301_R3667
31.1
RHH5237_R3609
30.9
RHH5266_R3638
44.9
RHH5209_R3580
25.4
Terminal effector memory CD4 T-cell nTPM: 7.2
Samples: 2
Max nTPM: 10.0
Min nTPM: 4.3
RHH5243_R3615
4.3
RHH5272_R3644
10.0
Terminal effector memory CD8 T-cell nTPM: 6.8
Samples: 4
Max nTPM: 9.8
Min nTPM: 1.1
RHH5232_R3604
9.0
RHH5204_R3575
1.1
RHH5261_R3633
9.8
RHH5296_R3662
7.2
Vd2 gdTCR nTPM: 8.0
Samples: 4
Max nTPM: 13.1
Min nTPM: 3.6
RHH5234_R3606
8.2
RHH5206_R3577
3.6
RHH5263_R3635
13.1
RHH5298_R3664
7.2
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
