MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.0 nTPM
HPA Brain:13.4 nTPM
GTEx:9.0 nTPM
FANTOM5:6.9 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.3
1827 Male, age 72, unknown 10.7
2019 Male, age 18, unknown 10.7
2411 Female, age 72, unknown 10.0
2828 Female, age 72, unknown 9.1
2219 Male, age 76, both hemispheres 8.3
2666 Male, age 74, left hemisphere 7.8
1833 Male, age 53, unknown 7.1
1830 Male, age 51, unknown 6.7
2586 Male, age 75, left hemisphere 6.3
1870 Female, age 42, unknown 5.8
Dorsal raphe nucleus
nTPM: 8.8
2750 Male, age 76, both hemispheres 11.1
2298 Female, age 72, unknown 11.0
2047 Male, age 72, unknown 7.4
1828 Male, age 53, unknown 7.3
2016 Female, age 72, unknown 7.0
Inferior colliculus
nTPM: 7.0
2097 Female, age 72, unknown 9.6
1890 Male, age 53, unknown 7.8
2849 Male, age 72, unknown 5.5
1848 Female, age 42, unknown 5.2
Median raphe nucleus
nTPM: 8.2
2220 Male, age 76, midline 8.2
Periaquaductal grey, anterior
nTPM: 8.9
1795 Male, age 51, unknown 10.1
2502 Female, age 75, unknown 9.1
1947 Male, age 18, unknown 7.5
Periaquaductal grey, dorsal
nTPM: 8.4
2850 Male, age 76, both hemispheres 9.4
1831 Male, age 72, unknown 8.4
1840 Male, age 53, unknown 8.0
2464 Female, age 72, unknown 7.8
Periaquaductal grey, lateral
nTPM: 10.6
2140 Male, age 76, both hemispheres 11.9
2272 Male, age 74, both hemispheres 11.4
2053 Male, age 18, unknown 8.3
Pretectal area
nTPM: 10.7
1944 Female, age 72, unknown 15.2
1816 Male, age 51, unknown 15.1
2007 Male, age 72, unknown 15.1
1817 Female, age 42, unknown 11.8
1815 Male, age 53, unknown 11.2
2273 Male, age 74, both hemispheres 11.0
2667 Female, age 75, unknown 9.3
2224 Female, age 72, unknown 9.0
2316 Male, age 76, right hemisphere 8.3
2407 Male, age 75, both hemispheres 5.6
2825 Male, age 18, unknown 5.5
Red nucleus
nTPM: 7.3
2785 Male, age 18, unknown 11.9
2588 Male, age 74, left hemisphere 9.4
2725 Female, age 75, unknown 9.3
2823 Male, age 76, right hemisphere 8.1
1821 Female, age 72, unknown 6.7
2503 Female, age 72, unknown 6.6
1865 Male, age 51, unknown 6.4
1904 Male, age 53, unknown 6.2
2584 Male, age 75, left hemisphere 6.2
2769 Male, age 72, unknown 6.2
1954 Female, age 42, unknown 5.6
2227 Male, age 72, unknown 5.0
Substantia nigra
nTPM: 13.4
1916 Female, age 42, unknown 22.0
2241 Male, age 72, unknown 15.6
1851 Male, age 51, unknown 15.4
2590 Female, age 75, unknown 15.2
1941 Male, age 53, unknown 13.1
2409 Female, age 72, unknown 12.7
1889 Female, age 72, unknown 12.1
2699 Male, age 18, unknown 10.5
2665 Male, age 74, both hemispheres 9.5
2583 Male, age 75, right hemisphere 7.6
Superior colliculus
nTPM: 8.4
2087 Female, age 72, unknown 14.1
2261 Male, age 18, unknown 12.1
1796 Male, age 53, unknown 9.7
1913 Female, age 42, unknown 8.0
2587 Male, age 74, left hemisphere 7.9
1995 Male, age 72, unknown 7.6
2664 Male, age 75, both hemispheres 6.7
1839 Male, age 51, unknown 6.2
1895 Male, age 76, right hemisphere 6.0
2668 Female, age 75, unknown 5.4
Ventral tegmental area
nTPM: 10.1
2410 Female, age 72, unknown 12.7
2218 Male, age 76, both hemispheres 12.4
1915 Female, age 42, unknown 11.7
2021 Male, age 53, unknown 10.1
1942 Male, age 51, unknown 8.0
2223 Female, age 72, unknown 5.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.0
Samples: 139

Max nTPM: 22.9
Min nTPM: 2.4
Std nTPM: 3.9
Median nTPM: 8.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 22.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 21.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 20.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 19.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 19.1
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 16.4
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 15.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 15.3
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 15.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 15.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 15.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.9
FF:10158-103A5 76 years, female 6.9

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