MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:62.8 nTPM
HPA Brain:39.7 nTPM
GTEx:62.8 nTPM
FANTOM5:111.4 Scaled Tags Per Million
Pig:23.2 nTPM
Mouse:23.3 nTPM
Allen mouse:7.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.0
2666 Male, age 74, left hemisphere 42.1
2586 Male, age 75, left hemisphere 41.0
2019 Male, age 18, unknown 38.4
2219 Male, age 76, both hemispheres 37.4
2411 Female, age 72, unknown 35.3
1827 Male, age 72, unknown 34.6
2828 Female, age 72, unknown 34.6
1870 Female, age 42, unknown 33.4
1833 Male, age 53, unknown 31.7
1830 Male, age 51, unknown 31.2
Dorsal raphe nucleus
nTPM: 32.6
2750 Male, age 76, both hemispheres 39.1
2047 Male, age 72, unknown 34.8
1828 Male, age 53, unknown 32.2
2298 Female, age 72, unknown 30.1
2016 Female, age 72, unknown 26.8
Inferior colliculus
nTPM: 26.0
1890 Male, age 53, unknown 29.3
1848 Female, age 42, unknown 25.8
2849 Male, age 72, unknown 25.3
2097 Female, age 72, unknown 23.5
Median raphe nucleus
nTPM: 39.7
2220 Male, age 76, midline 39.7
Periaquaductal grey, anterior
nTPM: 34.0
1795 Male, age 51, unknown 34.9
2502 Female, age 75, unknown 34.3
1947 Male, age 18, unknown 32.7
Periaquaductal grey, dorsal
nTPM: 25.0
2464 Female, age 72, unknown 28.3
1831 Male, age 72, unknown 27.4
2850 Male, age 76, both hemispheres 23.7
1840 Male, age 53, unknown 20.6
Periaquaductal grey, lateral
nTPM: 28.2
2272 Male, age 74, both hemispheres 31.4
2053 Male, age 18, unknown 27.4
2140 Male, age 76, both hemispheres 25.7
Pretectal area
nTPM: 34.7
2007 Male, age 72, unknown 42.3
1816 Male, age 51, unknown 41.8
1817 Female, age 42, unknown 40.8
1815 Male, age 53, unknown 40.2
1944 Female, age 72, unknown 37.3
2407 Male, age 75, both hemispheres 35.4
2667 Female, age 75, unknown 34.8
2273 Male, age 74, both hemispheres 28.7
2316 Male, age 76, right hemisphere 28.2
2825 Male, age 18, unknown 26.3
2224 Female, age 72, unknown 25.6
Red nucleus
nTPM: 38.8
2503 Female, age 72, unknown 45.4
2584 Male, age 75, left hemisphere 43.1
2785 Male, age 18, unknown 42.1
2725 Female, age 75, unknown 41.5
1865 Male, age 51, unknown 38.7
2588 Male, age 74, left hemisphere 38.1
1904 Male, age 53, unknown 37.9
2769 Male, age 72, unknown 37.9
2227 Male, age 72, unknown 36.1
1954 Female, age 42, unknown 35.8
2823 Male, age 76, right hemisphere 35.5
1821 Female, age 72, unknown 33.3
Substantia nigra
nTPM: 37.5
1916 Female, age 42, unknown 49.3
1851 Male, age 51, unknown 42.0
2699 Male, age 18, unknown 40.8
1941 Male, age 53, unknown 40.5
1889 Female, age 72, unknown 38.2
2409 Female, age 72, unknown 36.6
2583 Male, age 75, right hemisphere 33.5
2590 Female, age 75, unknown 32.9
2665 Male, age 74, both hemispheres 31.8
2241 Male, age 72, unknown 29.2
Superior colliculus
nTPM: 33.9
2087 Female, age 72, unknown 37.9
1913 Female, age 42, unknown 36.7
1796 Male, age 53, unknown 36.1
2261 Male, age 18, unknown 36.1
2668 Female, age 75, unknown 34.3
1995 Male, age 72, unknown 33.6
2587 Male, age 74, left hemisphere 32.8
2664 Male, age 75, both hemispheres 32.0
1839 Male, age 51, unknown 30.9
1895 Male, age 76, right hemisphere 28.4
Ventral tegmental area
nTPM: 35.7
2410 Female, age 72, unknown 40.7
1915 Female, age 42, unknown 38.5
2218 Male, age 76, both hemispheres 36.3
2223 Female, age 72, unknown 35.6
2021 Male, age 53, unknown 31.8
1942 Male, age 51, unknown 31.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 62.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.8
Samples: 139

Max nTPM: 146.3
Min nTPM: 31.6
Std nTPM: 14.3
Median nTPM: 61.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 146.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 105.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 100.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 95.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 94.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 92.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 88.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 86.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 85.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 81.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 80.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 111.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 111.4
FF:10158-103A5 76 years, female 111.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.3
Samples: 4

Max nTPM: 20.5
Min nTPM: 19.9
Sample A Female 20.1
Sample B Female 19.9
Sample C Male 20.5
Sample D Male 20.5
Midbrain
nTPM: 22.7
Samples: 4

Max nTPM: 26.9
Min nTPM: 17.8
Sample A Female 26.9
Sample B Female 17.8
Sample C Male 24.9
Sample D Male 21.2
Periaqueductal gray
nTPM: 17.0
Samples: 3

Max nTPM: 18.3
Min nTPM: 15.8
Sample B Female 16.8
Sample C Male 18.3
Sample D Male 15.8
Superior colliculi
nTPM: 23.2
Samples: 4

Max nTPM: 25.7
Min nTPM: 21.2
Sample A Female 21.9
Sample B Female 21.2
Sample C Male 25.7
Sample D Male 23.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.3
Samples: 4

Max nTPM: 25.4
Min nTPM: 21.8
Sample A Male 25.4
Sample B Male 21.8
Sample C Female 23.5
Sample D Female 22.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.1
74882206 Antisense, RP_060315_04_E05, Mouse strain C57BL/6J (56 days, male) 8.1
69608414 Antisense, RP_050426_04_A11, Mouse strain C57BL/6J (56 days, male) 6.1

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