MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.4 nTPM
HPA Brain:12.6 nTPM
GTEx:29.4 nTPM
FANTOM5:37.3 Scaled Tags Per Million
Mouse:14.5 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 12.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.8
2586 Male, age 75, left hemisphere 13.5
2219 Male, age 76, both hemispheres 12.4
1827 Male, age 72, unknown 12.3
2019 Male, age 18, unknown 12.2
2828 Female, age 72, unknown 12.2
2666 Male, age 74, left hemisphere 11.6
1830 Male, age 51, unknown 11.2
1870 Female, age 42, unknown 11.2
2411 Female, age 72, unknown 11.2
1833 Male, age 53, unknown 10.1
Dorsal raphe nucleus
nTPM: 11.9
2047 Male, age 72, unknown 13.0
1828 Male, age 53, unknown 12.2
2298 Female, age 72, unknown 11.9
2750 Male, age 76, both hemispheres 11.4
2016 Female, age 72, unknown 10.8
Inferior colliculus
nTPM: 11.3
2097 Female, age 72, unknown 12.0
1848 Female, age 42, unknown 11.8
1890 Male, age 53, unknown 10.8
2849 Male, age 72, unknown 10.8
Median raphe nucleus
nTPM: 10.9
2220 Male, age 76, midline 10.9
Periaquaductal grey, anterior
nTPM: 12.6
1795 Male, age 51, unknown 13.7
1947 Male, age 18, unknown 12.7
2502 Female, age 75, unknown 11.4
Periaquaductal grey, dorsal
nTPM: 10.1
2464 Female, age 72, unknown 10.9
1840 Male, age 53, unknown 10.1
1831 Male, age 72, unknown 10.0
2850 Male, age 76, both hemispheres 9.3
Periaquaductal grey, lateral
nTPM: 11.3
2272 Male, age 74, both hemispheres 13.0
2053 Male, age 18, unknown 10.7
2140 Male, age 76, both hemispheres 10.3
Pretectal area
nTPM: 12.0
2007 Male, age 72, unknown 13.5
2407 Male, age 75, both hemispheres 13.0
2667 Female, age 75, unknown 12.6
1816 Male, age 51, unknown 12.5
2273 Male, age 74, both hemispheres 12.2
1944 Female, age 72, unknown 11.7
2825 Male, age 18, unknown 11.7
1817 Female, age 42, unknown 11.6
2316 Male, age 76, right hemisphere 11.4
2224 Female, age 72, unknown 11.2
1815 Male, age 53, unknown 10.8
Red nucleus
nTPM: 11.6
2584 Male, age 75, left hemisphere 13.3
2785 Male, age 18, unknown 12.7
2725 Female, age 75, unknown 12.6
2769 Male, age 72, unknown 12.2
2588 Male, age 74, left hemisphere 12.1
2227 Male, age 72, unknown 12.0
1904 Male, age 53, unknown 11.1
2503 Female, age 72, unknown 11.1
1821 Female, age 72, unknown 10.7
1865 Male, age 51, unknown 10.5
2823 Male, age 76, right hemisphere 10.5
1954 Female, age 42, unknown 10.1
Substantia nigra
nTPM: 10.7
1941 Male, age 53, unknown 13.1
2583 Male, age 75, right hemisphere 12.1
2590 Female, age 75, unknown 12.1
2665 Male, age 74, both hemispheres 11.7
1851 Male, age 51, unknown 10.9
1916 Female, age 42, unknown 10.8
1889 Female, age 72, unknown 10.4
2699 Male, age 18, unknown 9.5
2409 Female, age 72, unknown 8.3
2241 Male, age 72, unknown 8.2
Superior colliculus
nTPM: 11.5
2664 Male, age 75, both hemispheres 13.1
1796 Male, age 53, unknown 12.5
2087 Female, age 72, unknown 12.0
2261 Male, age 18, unknown 12.0
1913 Female, age 42, unknown 11.4
1839 Male, age 51, unknown 11.2
1895 Male, age 76, right hemisphere 11.2
1995 Male, age 72, unknown 10.9
2587 Male, age 74, left hemisphere 10.7
2668 Female, age 75, unknown 9.6
Ventral tegmental area
nTPM: 10.6
1942 Male, age 51, unknown 10.8
2410 Female, age 72, unknown 10.8
2021 Male, age 53, unknown 10.7
2223 Female, age 72, unknown 10.7
1915 Female, age 42, unknown 10.5
2218 Male, age 76, both hemispheres 10.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.4
Samples: 139

Max nTPM: 64.4
Min nTPM: 12.1
Std nTPM: 11.3
Median nTPM: 26.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 64.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 62.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 60.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 58.2
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 52.1
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 51.7
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 51.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 50.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 49.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 49.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 47.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.3
FF:10158-103A5 76 years, female 37.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.5
Samples: 4

Max nTPM: 15.5
Min nTPM: 12.1
Sample A Male 15.2
Sample B Male 12.1
Sample C Female 15.3
Sample D Female 15.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
69608028 Antisense, RP_050426_03_D03, Mouse strain C57BL/6J (56 days, male) 2.4

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