MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:90.0 nTPM
HPA Brain:43.6 nTPM
GTEx:90.0 nTPM
FANTOM5:81.1 Scaled Tags Per Million
Pig:164.5 nTPM
Mouse:378.2 nTPM
Allen mouse:19.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.4
2019 Male, age 18, unknown 57.1
2411 Female, age 72, unknown 43.0
1827 Male, age 72, unknown 37.0
1870 Female, age 42, unknown 33.7
2666 Male, age 74, left hemisphere 30.3
1833 Male, age 53, unknown 28.8
2219 Male, age 76, both hemispheres 28.5
2828 Female, age 72, unknown 27.5
2586 Male, age 75, left hemisphere 24.6
1830 Male, age 51, unknown 23.6
Dorsal raphe nucleus
nTPM: 36.7
1828 Male, age 53, unknown 48.9
2298 Female, age 72, unknown 44.4
2047 Male, age 72, unknown 35.2
2750 Male, age 76, both hemispheres 32.2
2016 Female, age 72, unknown 23.1
Inferior colliculus
nTPM: 32.7
2097 Female, age 72, unknown 41.6
1890 Male, age 53, unknown 35.3
1848 Female, age 42, unknown 32.3
2849 Male, age 72, unknown 21.8
Median raphe nucleus
nTPM: 26.3
2220 Male, age 76, midline 26.3
Periaquaductal grey, anterior
nTPM: 36.9
1947 Male, age 18, unknown 39.7
2502 Female, age 75, unknown 36.4
1795 Male, age 51, unknown 34.5
Periaquaductal grey, dorsal
nTPM: 21.7
2464 Female, age 72, unknown 27.0
1831 Male, age 72, unknown 22.1
1840 Male, age 53, unknown 20.2
2850 Male, age 76, both hemispheres 17.6
Periaquaductal grey, lateral
nTPM: 24.8
2272 Male, age 74, both hemispheres 33.8
2053 Male, age 18, unknown 22.2
2140 Male, age 76, both hemispheres 18.5
Pretectal area
nTPM: 43.6
2007 Male, age 72, unknown 65.4
1817 Female, age 42, unknown 62.8
1816 Male, age 51, unknown 58.5
1944 Female, age 72, unknown 55.8
2667 Female, age 75, unknown 53.4
1815 Male, age 53, unknown 41.1
2273 Male, age 74, both hemispheres 37.0
2224 Female, age 72, unknown 31.9
2316 Male, age 76, right hemisphere 27.0
2407 Male, age 75, both hemispheres 24.3
2825 Male, age 18, unknown 22.4
Red nucleus
nTPM: 43.3
1821 Female, age 72, unknown 71.9
2725 Female, age 75, unknown 52.9
2785 Male, age 18, unknown 49.3
1954 Female, age 42, unknown 43.6
1865 Male, age 51, unknown 43.3
2769 Male, age 72, unknown 41.1
2503 Female, age 72, unknown 40.5
1904 Male, age 53, unknown 39.9
2227 Male, age 72, unknown 39.6
2823 Male, age 76, right hemisphere 36.1
2588 Male, age 74, left hemisphere 35.3
2584 Male, age 75, left hemisphere 26.3
Substantia nigra
nTPM: 43.2
1916 Female, age 42, unknown 63.0
1889 Female, age 72, unknown 59.6
1851 Male, age 51, unknown 55.4
1941 Male, age 53, unknown 53.1
2409 Female, age 72, unknown 42.0
2241 Male, age 72, unknown 41.0
2665 Male, age 74, both hemispheres 33.7
2699 Male, age 18, unknown 31.8
2590 Female, age 75, unknown 27.3
2583 Male, age 75, right hemisphere 25.5
Superior colliculus
nTPM: 31.4
2087 Female, age 72, unknown 41.5
1895 Male, age 76, right hemisphere 37.6
2261 Male, age 18, unknown 35.2
2587 Male, age 74, left hemisphere 33.3
1796 Male, age 53, unknown 33.1
2668 Female, age 75, unknown 28.7
1839 Male, age 51, unknown 28.5
1913 Female, age 42, unknown 26.5
1995 Male, age 72, unknown 26.4
2664 Male, age 75, both hemispheres 23.3
Ventral tegmental area
nTPM: 35.5
2410 Female, age 72, unknown 56.2
1915 Female, age 42, unknown 43.9
2218 Male, age 76, both hemispheres 38.1
2223 Female, age 72, unknown 28.2
1942 Male, age 51, unknown 26.5
2021 Male, age 53, unknown 19.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 90.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 90.0
Samples: 139

Max nTPM: 188.1
Min nTPM: 41.7
Std nTPM: 25.6
Median nTPM: 86.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 188.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 186.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 166.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 147.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 142.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 138.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 136.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 133.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 131.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 130.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 129.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 81.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 81.1
FF:10158-103A5 76 years, female 81.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 164.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 130.2
Samples: 4

Max nTPM: 170.1
Min nTPM: 99.3
Sample A Female 170.1
Sample B Female 99.3
Sample C Male 141.8
Sample D Male 109.7
Midbrain
nTPM: 143.3
Samples: 4

Max nTPM: 187.6
Min nTPM: 113.7
Sample A Female 146.0
Sample B Female 113.7
Sample C Male 187.6
Sample D Male 125.9
Periaqueductal gray
nTPM: 102.8
Samples: 3

Max nTPM: 116.7
Min nTPM: 86.3
Sample B Female 105.3
Sample C Male 116.7
Sample D Male 86.3
Superior colliculi
nTPM: 164.5
Samples: 4

Max nTPM: 209.0
Min nTPM: 130.8
Sample A Female 181.4
Sample B Female 130.8
Sample C Male 209.0
Sample D Male 136.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 378.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 378.2
Samples: 4

Max nTPM: 388.2
Min nTPM: 358.9
Sample A Male 358.9
Sample B Male 388.2
Sample C Female 384.5
Sample D Female 381.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 19.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 19.7
67815548 Antisense, RP_040920_01_H08, Mouse strain C57BL/6J (56 days, male) 19.7

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