MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.2 nTPM
HPA Brain:44.0 nTPM
GTEx:29.2 nTPM
FANTOM5:30.3 Scaled Tags Per Million
Pig:12.9 nTPM
Mouse:5.4 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.3
2019 Male, age 18, unknown 44.4
1830 Male, age 51, unknown 37.7
1827 Male, age 72, unknown 37.1
1833 Male, age 53, unknown 36.9
1870 Female, age 42, unknown 36.9
2219 Male, age 76, both hemispheres 36.9
2586 Male, age 75, left hemisphere 36.3
2828 Female, age 72, unknown 36.3
2411 Female, age 72, unknown 35.8
2666 Male, age 74, left hemisphere 34.5
Dorsal raphe nucleus
nTPM: 37.0
2750 Male, age 76, both hemispheres 41.0
1828 Male, age 53, unknown 38.1
2298 Female, age 72, unknown 37.3
2016 Female, age 72, unknown 35.9
2047 Male, age 72, unknown 33.1
Inferior colliculus
nTPM: 38.8
1890 Male, age 53, unknown 41.4
1848 Female, age 42, unknown 39.2
2097 Female, age 72, unknown 38.7
2849 Male, age 72, unknown 35.7
Median raphe nucleus
nTPM: 44.0
2220 Male, age 76, midline 44.0
Periaquaductal grey, anterior
nTPM: 38.2
2502 Female, age 75, unknown 45.4
1795 Male, age 51, unknown 34.6
1947 Male, age 18, unknown 34.5
Periaquaductal grey, dorsal
nTPM: 37.2
2850 Male, age 76, both hemispheres 39.2
2464 Female, age 72, unknown 37.4
1831 Male, age 72, unknown 37.0
1840 Male, age 53, unknown 35.2
Periaquaductal grey, lateral
nTPM: 38.9
2272 Male, age 74, both hemispheres 43.2
2140 Male, age 76, both hemispheres 37.3
2053 Male, age 18, unknown 36.1
Pretectal area
nTPM: 41.5
1816 Male, age 51, unknown 50.1
1817 Female, age 42, unknown 46.1
1944 Female, age 72, unknown 45.2
2007 Male, age 72, unknown 45.0
1815 Male, age 53, unknown 44.5
2273 Male, age 74, both hemispheres 40.5
2667 Female, age 75, unknown 40.0
2316 Male, age 76, right hemisphere 37.8
2224 Female, age 72, unknown 37.5
2407 Male, age 75, both hemispheres 36.3
2825 Male, age 18, unknown 33.5
Red nucleus
nTPM: 37.9
2785 Male, age 18, unknown 42.8
2823 Male, age 76, right hemisphere 38.9
2769 Male, age 72, unknown 38.7
2227 Male, age 72, unknown 38.6
2588 Male, age 74, left hemisphere 38.3
1954 Female, age 42, unknown 37.8
1821 Female, age 72, unknown 37.7
1865 Male, age 51, unknown 37.6
2503 Female, age 72, unknown 37.4
2725 Female, age 75, unknown 36.0
2584 Male, age 75, left hemisphere 35.3
1904 Male, age 53, unknown 35.1
Substantia nigra
nTPM: 37.6
2241 Male, age 72, unknown 43.5
1941 Male, age 53, unknown 42.7
1916 Female, age 42, unknown 40.2
1889 Female, age 72, unknown 39.1
1851 Male, age 51, unknown 36.7
2665 Male, age 74, both hemispheres 36.3
2590 Female, age 75, unknown 35.4
2699 Male, age 18, unknown 34.7
2409 Female, age 72, unknown 34.2
2583 Male, age 75, right hemisphere 33.3
Superior colliculus
nTPM: 39.6
2261 Male, age 18, unknown 45.6
2087 Female, age 72, unknown 45.3
2587 Male, age 74, left hemisphere 40.3
1839 Male, age 51, unknown 39.6
2664 Male, age 75, both hemispheres 38.9
1796 Male, age 53, unknown 37.9
1913 Female, age 42, unknown 37.8
2668 Female, age 75, unknown 37.6
1895 Male, age 76, right hemisphere 36.4
1995 Male, age 72, unknown 36.4
Ventral tegmental area
nTPM: 36.0
2218 Male, age 76, both hemispheres 40.5
2223 Female, age 72, unknown 40.0
2410 Female, age 72, unknown 37.0
1915 Female, age 42, unknown 34.3
1942 Male, age 51, unknown 32.7
2021 Male, age 53, unknown 31.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.2
Samples: 139

Max nTPM: 45.6
Min nTPM: 17.6
Std nTPM: 5.5
Median nTPM: 28.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 45.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 45.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 45.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 44.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 43.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 42.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 41.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 41.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 40.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 38.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 38.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.3
FF:10158-103A5 76 years, female 30.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.3
Samples: 4

Max nTPM: 11.8
Min nTPM: 7.9
Sample A Female 11.8
Sample B Female 7.9
Sample C Male 10.9
Sample D Male 10.7
Midbrain
nTPM: 12.8
Samples: 4

Max nTPM: 15.9
Min nTPM: 10.0
Sample A Female 10.0
Sample B Female 11.1
Sample C Male 15.9
Sample D Male 14.3
Periaqueductal gray
nTPM: 10.2
Samples: 3

Max nTPM: 10.6
Min nTPM: 9.6
Sample B Female 9.6
Sample C Male 10.6
Sample D Male 10.5
Superior colliculi
nTPM: 12.9
Samples: 4

Max nTPM: 15.5
Min nTPM: 8.3
Sample A Female 13.8
Sample B Female 8.3
Sample C Male 14.0
Sample D Male 15.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.4
Samples: 4

Max nTPM: 5.8
Min nTPM: 4.3
Sample A Male 4.3
Sample B Male 5.8
Sample C Female 5.8
Sample D Female 5.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
70200908 Antisense, RP_050517_03_A01, Mouse strain C57BL/6J (56 days, male) 0.2

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