MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:94.9 nTPM
HPA Brain:78.1 nTPM
GTEx:94.9 nTPM
FANTOM5:97.5 Scaled Tags Per Million
Pig:97.4 nTPM
Mouse:85.2 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 78.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.7
1870 Female, age 42, unknown 77.4
2411 Female, age 72, unknown 75.3
1833 Male, age 53, unknown 69.4
2666 Male, age 74, left hemisphere 68.8
1827 Male, age 72, unknown 68.7
2828 Female, age 72, unknown 66.4
1830 Male, age 51, unknown 64.1
2019 Male, age 18, unknown 63.4
2586 Male, age 75, left hemisphere 63.1
2219 Male, age 76, both hemispheres 60.8
Dorsal raphe nucleus
nTPM: 78.1
2298 Female, age 72, unknown 81.3
2016 Female, age 72, unknown 81.0
2750 Male, age 76, both hemispheres 76.5
2047 Male, age 72, unknown 76.2
1828 Male, age 53, unknown 75.5
Inferior colliculus
nTPM: 72.4
1890 Male, age 53, unknown 78.4
2097 Female, age 72, unknown 74.8
2849 Male, age 72, unknown 68.3
1848 Female, age 42, unknown 68.2
Median raphe nucleus
nTPM: 67.2
2220 Male, age 76, midline 67.2
Periaquaductal grey, anterior
nTPM: 68.2
1947 Male, age 18, unknown 70.0
2502 Female, age 75, unknown 68.4
1795 Male, age 51, unknown 66.1
Periaquaductal grey, dorsal
nTPM: 75.7
2850 Male, age 76, both hemispheres 85.1
1840 Male, age 53, unknown 78.0
2464 Female, age 72, unknown 69.9
1831 Male, age 72, unknown 69.7
Periaquaductal grey, lateral
nTPM: 70.9
2140 Male, age 76, both hemispheres 75.7
2053 Male, age 18, unknown 72.3
2272 Male, age 74, both hemispheres 64.8
Pretectal area
nTPM: 68.7
2224 Female, age 72, unknown 79.1
1817 Female, age 42, unknown 71.2
2273 Male, age 74, both hemispheres 70.7
2667 Female, age 75, unknown 70.6
2825 Male, age 18, unknown 70.0
2007 Male, age 72, unknown 69.6
1815 Male, age 53, unknown 68.2
2316 Male, age 76, right hemisphere 67.3
1816 Male, age 51, unknown 65.5
1944 Female, age 72, unknown 63.6
2407 Male, age 75, both hemispheres 59.8
Red nucleus
nTPM: 72.5
1821 Female, age 72, unknown 83.1
2503 Female, age 72, unknown 81.1
1865 Male, age 51, unknown 79.5
2725 Female, age 75, unknown 76.2
1954 Female, age 42, unknown 75.5
1904 Male, age 53, unknown 73.8
2769 Male, age 72, unknown 72.9
2227 Male, age 72, unknown 72.0
2823 Male, age 76, right hemisphere 70.8
2588 Male, age 74, left hemisphere 67.8
2785 Male, age 18, unknown 63.6
2584 Male, age 75, left hemisphere 53.5
Substantia nigra
nTPM: 76.7
2409 Female, age 72, unknown 90.6
2699 Male, age 18, unknown 88.2
2241 Male, age 72, unknown 82.0
1851 Male, age 51, unknown 81.4
2665 Male, age 74, both hemispheres 79.7
1916 Female, age 42, unknown 78.1
2590 Female, age 75, unknown 69.2
1889 Female, age 72, unknown 68.5
1941 Male, age 53, unknown 68.4
2583 Male, age 75, right hemisphere 61.1
Superior colliculus
nTPM: 67.3
2587 Male, age 74, left hemisphere 76.7
1913 Female, age 42, unknown 70.4
1995 Male, age 72, unknown 70.1
1895 Male, age 76, right hemisphere 69.0
2668 Female, age 75, unknown 67.7
1839 Male, age 51, unknown 65.8
2261 Male, age 18, unknown 65.4
2087 Female, age 72, unknown 63.0
2664 Male, age 75, both hemispheres 62.8
1796 Male, age 53, unknown 62.6
Ventral tegmental area
nTPM: 72.9
2021 Male, age 53, unknown 76.6
2410 Female, age 72, unknown 75.8
1915 Female, age 42, unknown 75.0
2223 Female, age 72, unknown 72.9
1942 Male, age 51, unknown 71.5
2218 Male, age 76, both hemispheres 65.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 94.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 94.9
Samples: 139

Max nTPM: 181.3
Min nTPM: 63.9
Std nTPM: 22.2
Median nTPM: 90.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 181.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 162.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 151.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 147.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 143.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 143.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 138.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 135.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 134.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 132.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 130.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 97.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 97.5
FF:10158-103A5 76 years, female 97.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 97.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 93.8
Samples: 4

Max nTPM: 117.8
Min nTPM: 77.6
Sample A Female 117.8
Sample B Female 77.6
Sample C Male 93.5
Sample D Male 86.4
Midbrain
nTPM: 97.4
Samples: 4

Max nTPM: 124.8
Min nTPM: 82.5
Sample A Female 124.8
Sample B Female 94.6
Sample C Male 87.6
Sample D Male 82.5
Periaqueductal gray
nTPM: 87.3
Samples: 3

Max nTPM: 91.2
Min nTPM: 81.1
Sample B Female 89.6
Sample C Male 91.2
Sample D Male 81.1
Superior colliculi
nTPM: 96.5
Samples: 4

Max nTPM: 117.3
Min nTPM: 80.3
Sample A Female 117.3
Sample B Female 80.3
Sample C Male 95.4
Sample D Male 93.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 85.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 85.2
Samples: 4

Max nTPM: 89.8
Min nTPM: 80.5
Sample A Male 84.9
Sample B Male 80.5
Sample C Female 85.4
Sample D Female 89.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
294043 Antisense, RP_040617_02_F01, Mouse strain C57BL/6J (56 days, male) 1.8
67881553 Antisense, RP_041018_01_E10, Mouse strain C57BL/6J (56 days, male) 1.1

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