MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:90.6 nTPM
HPA Brain:161.9 nTPM
GTEx:90.6 nTPM
FANTOM5:66.9 Scaled Tags Per Million
Pig:97.5 nTPM
Mouse:139.6 nTPM
Allen mouse:11.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 161.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 154.8
2586 Male, age 75, left hemisphere 264.8
2666 Male, age 74, left hemisphere 170.4
2828 Female, age 72, unknown 155.9
1827 Male, age 72, unknown 147.1
2219 Male, age 76, both hemispheres 143.1
2019 Male, age 18, unknown 140.9
1833 Male, age 53, unknown 134.1
1830 Male, age 51, unknown 133.4
1870 Female, age 42, unknown 132.4
2411 Female, age 72, unknown 125.7
Dorsal raphe nucleus
nTPM: 127.9
2047 Male, age 72, unknown 149.9
2750 Male, age 76, both hemispheres 147.7
1828 Male, age 53, unknown 123.7
2298 Female, age 72, unknown 113.9
2016 Female, age 72, unknown 104.0
Inferior colliculus
nTPM: 131.6
1848 Female, age 42, unknown 142.7
2849 Male, age 72, unknown 130.4
1890 Male, age 53, unknown 129.6
2097 Female, age 72, unknown 123.8
Median raphe nucleus
nTPM: 142.3
2220 Male, age 76, midline 142.3
Periaquaductal grey, anterior
nTPM: 147.8
1947 Male, age 18, unknown 156.3
1795 Male, age 51, unknown 148.9
2502 Female, age 75, unknown 138.1
Periaquaductal grey, dorsal
nTPM: 102.8
1840 Male, age 53, unknown 124.9
2464 Female, age 72, unknown 108.5
1831 Male, age 72, unknown 102.2
2850 Male, age 76, both hemispheres 75.8
Periaquaductal grey, lateral
nTPM: 95.1
2053 Male, age 18, unknown 116.6
2272 Male, age 74, both hemispheres 92.3
2140 Male, age 76, both hemispheres 76.5
Pretectal area
nTPM: 137.6
2007 Male, age 72, unknown 183.2
1817 Female, age 42, unknown 170.3
1944 Female, age 72, unknown 169.8
1816 Male, age 51, unknown 167.8
1815 Male, age 53, unknown 156.3
2825 Male, age 18, unknown 129.9
2667 Female, age 75, unknown 129.2
2407 Male, age 75, both hemispheres 127.5
2224 Female, age 72, unknown 108.6
2316 Male, age 76, right hemisphere 87.6
2273 Male, age 74, both hemispheres 83.4
Red nucleus
nTPM: 145.1
2588 Male, age 74, left hemisphere 202.1
2584 Male, age 75, left hemisphere 175.7
2785 Male, age 18, unknown 147.7
2769 Male, age 72, unknown 139.6
1821 Female, age 72, unknown 139.1
2227 Male, age 72, unknown 139.0
1865 Male, age 51, unknown 138.8
1904 Male, age 53, unknown 137.6
2503 Female, age 72, unknown 135.8
1954 Female, age 42, unknown 133.5
2823 Male, age 76, right hemisphere 130.5
2725 Female, age 75, unknown 121.0
Substantia nigra
nTPM: 161.9
2665 Male, age 74, both hemispheres 204.5
1916 Female, age 42, unknown 193.5
2583 Male, age 75, right hemisphere 175.7
1889 Female, age 72, unknown 167.2
1941 Male, age 53, unknown 167.1
1851 Male, age 51, unknown 165.9
2241 Male, age 72, unknown 143.5
2590 Female, age 75, unknown 142.0
2699 Male, age 18, unknown 131.4
2409 Female, age 72, unknown 127.8
Superior colliculus
nTPM: 143.5
2668 Female, age 75, unknown 207.7
2664 Male, age 75, both hemispheres 174.6
2587 Male, age 74, left hemisphere 150.7
1796 Male, age 53, unknown 148.1
2087 Female, age 72, unknown 144.5
2261 Male, age 18, unknown 139.6
1839 Male, age 51, unknown 132.8
1895 Male, age 76, right hemisphere 121.7
1913 Female, age 42, unknown 110.2
1995 Male, age 72, unknown 105.3
Ventral tegmental area
nTPM: 146.6
2223 Female, age 72, unknown 177.8
2218 Male, age 76, both hemispheres 159.2
2410 Female, age 72, unknown 157.0
1915 Female, age 42, unknown 137.2
1942 Male, age 51, unknown 137.0
2021 Male, age 53, unknown 111.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 90.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 90.6
Samples: 139

Max nTPM: 175.5
Min nTPM: 37.7
Std nTPM: 29.5
Median nTPM: 86.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 175.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 170.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 154.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 151.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 151.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 150.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 148.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 147.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 144.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 142.4
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 141.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.9
FF:10158-103A5 76 years, female 66.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 97.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 71.2
Samples: 4

Max nTPM: 81.4
Min nTPM: 46.8
Sample A Female 81.4
Sample B Female 46.8
Sample C Male 79.3
Sample D Male 77.4
Midbrain
nTPM: 97.5
Samples: 4

Max nTPM: 132.5
Min nTPM: 65.9
Sample A Female 104.7
Sample B Female 65.9
Sample C Male 132.5
Sample D Male 86.8
Periaqueductal gray
nTPM: 57.2
Samples: 3

Max nTPM: 62.4
Min nTPM: 51.4
Sample B Female 62.4
Sample C Male 57.9
Sample D Male 51.4
Superior colliculi
nTPM: 89.8
Samples: 4

Max nTPM: 126.1
Min nTPM: 44.9
Sample A Female 85.0
Sample B Female 44.9
Sample C Male 126.1
Sample D Male 103.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 139.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 139.6
Samples: 4

Max nTPM: 145.0
Min nTPM: 133.1
Sample A Male 135.5
Sample B Male 133.1
Sample C Female 144.7
Sample D Female 145.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.1
74882698 Antisense, RP_060315_04_G04, Mouse strain C57BL/6J (56 days, male) 11.9
69817240 Antisense, RP_050510_02_H09, Mouse strain C57BL/6J (56 days, male) 10.3

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