MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:161.1 nTPM
HPA Brain:196.2 nTPM
GTEx:161.1 nTPM
FANTOM5:4.6 Scaled Tags Per Million
Pig:507.2 nTPM
Mouse:312.7 nTPM
Allen mouse:20.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 196.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 142.4
2219 Male, age 76, both hemispheres 192.6
1827 Male, age 72, unknown 189.4
2019 Male, age 18, unknown 159.7
2828 Female, age 72, unknown 156.1
2666 Male, age 74, left hemisphere 146.8
2411 Female, age 72, unknown 120.0
1833 Male, age 53, unknown 119.4
1870 Female, age 42, unknown 117.0
2586 Male, age 75, left hemisphere 116.0
1830 Male, age 51, unknown 107.4
Dorsal raphe nucleus
nTPM: 112.4
2298 Female, age 72, unknown 137.3
1828 Male, age 53, unknown 118.5
2750 Male, age 76, both hemispheres 114.8
2047 Male, age 72, unknown 112.4
2016 Female, age 72, unknown 79.2
Inferior colliculus
nTPM: 177.9
2097 Female, age 72, unknown 204.5
1848 Female, age 42, unknown 171.5
2849 Male, age 72, unknown 169.9
1890 Male, age 53, unknown 165.8
Median raphe nucleus
nTPM: 174.3
2220 Male, age 76, midline 174.3
Periaquaductal grey, anterior
nTPM: 167.8
2502 Female, age 75, unknown 205.5
1795 Male, age 51, unknown 160.3
1947 Male, age 18, unknown 137.6
Periaquaductal grey, dorsal
nTPM: 122.5
1831 Male, age 72, unknown 137.0
1840 Male, age 53, unknown 121.5
2850 Male, age 76, both hemispheres 119.5
2464 Female, age 72, unknown 112.1
Periaquaductal grey, lateral
nTPM: 98.0
2053 Male, age 18, unknown 114.6
2140 Male, age 76, both hemispheres 103.6
2272 Male, age 74, both hemispheres 75.7
Pretectal area
nTPM: 196.2
1816 Male, age 51, unknown 291.4
1817 Female, age 42, unknown 287.7
1944 Female, age 72, unknown 285.6
2007 Male, age 72, unknown 270.6
2667 Female, age 75, unknown 258.1
1815 Male, age 53, unknown 213.3
2316 Male, age 76, right hemisphere 129.6
2825 Male, age 18, unknown 125.8
2224 Female, age 72, unknown 120.5
2407 Male, age 75, both hemispheres 110.2
2273 Male, age 74, both hemispheres 64.8
Red nucleus
nTPM: 117.5
2785 Male, age 18, unknown 176.3
1821 Female, age 72, unknown 137.8
2823 Male, age 76, right hemisphere 131.0
1954 Female, age 42, unknown 124.5
2584 Male, age 75, left hemisphere 121.5
2769 Male, age 72, unknown 112.5
2588 Male, age 74, left hemisphere 112.0
2503 Female, age 72, unknown 111.5
2227 Male, age 72, unknown 107.7
1865 Male, age 51, unknown 103.9
1904 Male, age 53, unknown 91.3
2725 Female, age 75, unknown 80.1
Substantia nigra
nTPM: 147.5
1889 Female, age 72, unknown 251.7
1941 Male, age 53, unknown 220.2
2665 Male, age 74, both hemispheres 200.8
1916 Female, age 42, unknown 191.0
1851 Male, age 51, unknown 143.3
2699 Male, age 18, unknown 105.6
2409 Female, age 72, unknown 94.4
2241 Male, age 72, unknown 94.1
2583 Male, age 75, right hemisphere 87.1
2590 Female, age 75, unknown 86.5
Superior colliculus
nTPM: 160.6
2087 Female, age 72, unknown 228.4
1895 Male, age 76, right hemisphere 201.2
2668 Female, age 75, unknown 193.5
1796 Male, age 53, unknown 180.5
2261 Male, age 18, unknown 163.0
2664 Male, age 75, both hemispheres 148.3
1839 Male, age 51, unknown 147.2
1913 Female, age 42, unknown 125.3
2587 Male, age 74, left hemisphere 110.3
1995 Male, age 72, unknown 108.7
Ventral tegmental area
nTPM: 130.2
2218 Male, age 76, both hemispheres 187.3
1915 Female, age 42, unknown 150.3
2410 Female, age 72, unknown 140.1
1942 Male, age 51, unknown 113.8
2223 Female, age 72, unknown 107.7
2021 Male, age 53, unknown 82.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 161.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 161.1
Samples: 139

Max nTPM: 930.9
Min nTPM: 4.9
Std nTPM: 142.7
Median nTPM: 133.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 930.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 603.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 575.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 459.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 428.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 413.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 391.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 386.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 385.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 368.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 335.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.6
FF:10158-103A5 76 years, female 4.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 507.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 184.9
Samples: 4

Max nTPM: 271.8
Min nTPM: 83.7
Sample A Female 271.8
Sample B Female 119.3
Sample C Male 264.7
Sample D Male 83.7
Midbrain
nTPM: 337.6
Samples: 4

Max nTPM: 569.6
Min nTPM: 85.8
Sample A Female 85.8
Sample B Female 161.4
Sample C Male 569.6
Sample D Male 533.5
Periaqueductal gray
nTPM: 200.1
Samples: 3

Max nTPM: 248.8
Min nTPM: 171.3
Sample B Female 171.3
Sample C Male 248.8
Sample D Male 180.3
Superior colliculi
nTPM: 507.2
Samples: 4

Max nTPM: 711.5
Min nTPM: 299.8
Sample A Female 540.7
Sample B Female 299.8
Sample C Male 711.5
Sample D Male 476.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 312.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 312.7
Samples: 4

Max nTPM: 341.8
Min nTPM: 291.1
Sample A Male 341.8
Sample B Male 316.3
Sample C Female 291.1
Sample D Female 301.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 20.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.9
100144408 Antisense, RP_110407_01_G07, Mouse strain C57BL/6J (56 days, male) 20.9

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