MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.7 nTPM
HPA Brain:156.1 nTPM
GTEx:24.7 nTPM
FANTOM5:27.8 Scaled Tags Per Million
Pig:38.1 nTPM
Mouse:14.5 nTPM
Allen mouse:5.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 156.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 148.9
2586 Male, age 75, left hemisphere 183.5
1830 Male, age 51, unknown 160.1
1870 Female, age 42, unknown 152.5
2219 Male, age 76, both hemispheres 152.1
1833 Male, age 53, unknown 150.5
2828 Female, age 72, unknown 146.6
2411 Female, age 72, unknown 144.3
2666 Male, age 74, left hemisphere 138.2
2019 Male, age 18, unknown 133.1
1827 Male, age 72, unknown 128.1
Dorsal raphe nucleus
nTPM: 136.4
2750 Male, age 76, both hemispheres 155.5
2047 Male, age 72, unknown 150.2
2016 Female, age 72, unknown 140.0
1828 Male, age 53, unknown 133.6
2298 Female, age 72, unknown 102.8
Inferior colliculus
nTPM: 135.7
2849 Male, age 72, unknown 148.6
1890 Male, age 53, unknown 142.4
1848 Female, age 42, unknown 136.6
2097 Female, age 72, unknown 115.1
Median raphe nucleus
nTPM: 149.9
2220 Male, age 76, midline 149.9
Periaquaductal grey, anterior
nTPM: 138.1
2502 Female, age 75, unknown 151.1
1947 Male, age 18, unknown 135.6
1795 Male, age 51, unknown 127.6
Periaquaductal grey, dorsal
nTPM: 132.8
2464 Female, age 72, unknown 142.8
1831 Male, age 72, unknown 139.6
1840 Male, age 53, unknown 124.5
2850 Male, age 76, both hemispheres 124.2
Periaquaductal grey, lateral
nTPM: 136.5
2053 Male, age 18, unknown 144.2
2140 Male, age 76, both hemispheres 142.6
2272 Male, age 74, both hemispheres 122.6
Pretectal area
nTPM: 120.4
2407 Male, age 75, both hemispheres 145.9
2316 Male, age 76, right hemisphere 144.8
2825 Male, age 18, unknown 141.9
1815 Male, age 53, unknown 121.9
2224 Female, age 72, unknown 121.0
2273 Male, age 74, both hemispheres 116.1
1817 Female, age 42, unknown 111.4
1944 Female, age 72, unknown 108.5
2667 Female, age 75, unknown 107.7
2007 Male, age 72, unknown 103.8
1816 Male, age 51, unknown 102.0
Red nucleus
nTPM: 156.1
2584 Male, age 75, left hemisphere 180.0
1865 Male, age 51, unknown 174.9
2503 Female, age 72, unknown 161.0
2769 Male, age 72, unknown 158.8
2227 Male, age 72, unknown 156.8
2588 Male, age 74, left hemisphere 156.5
2823 Male, age 76, right hemisphere 156.3
1904 Male, age 53, unknown 156.0
1954 Female, age 42, unknown 146.5
2785 Male, age 18, unknown 145.0
1821 Female, age 72, unknown 140.4
2725 Female, age 75, unknown 140.4
Substantia nigra
nTPM: 135.4
2583 Male, age 75, right hemisphere 156.6
2699 Male, age 18, unknown 152.3
2590 Female, age 75, unknown 148.8
2409 Female, age 72, unknown 143.0
1941 Male, age 53, unknown 136.1
1851 Male, age 51, unknown 131.4
1889 Female, age 72, unknown 122.6
2241 Male, age 72, unknown 122.6
1916 Female, age 42, unknown 120.4
2665 Male, age 74, both hemispheres 119.9
Superior colliculus
nTPM: 138.7
1913 Female, age 42, unknown 174.2
1995 Male, age 72, unknown 151.9
2664 Male, age 75, both hemispheres 145.6
1895 Male, age 76, right hemisphere 144.5
1839 Male, age 51, unknown 143.9
2668 Female, age 75, unknown 139.8
2587 Male, age 74, left hemisphere 128.8
1796 Male, age 53, unknown 124.4
2261 Male, age 18, unknown 117.5
2087 Female, age 72, unknown 116.2
Ventral tegmental area
nTPM: 142.4
2223 Female, age 72, unknown 154.5
2021 Male, age 53, unknown 152.9
1942 Male, age 51, unknown 145.0
2410 Female, age 72, unknown 143.7
2218 Male, age 76, both hemispheres 133.8
1915 Female, age 42, unknown 124.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.7
Samples: 139

Max nTPM: 53.7
Min nTPM: 10.5
Std nTPM: 6.6
Median nTPM: 24.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 53.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 38.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 38.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 36.8
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 36.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 36.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 35.7
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 35.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 35.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 35.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 34.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.8
FF:10158-103A5 76 years, female 27.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.2
Samples: 4

Max nTPM: 41.2
Min nTPM: 30.8
Sample A Female 32.3
Sample B Female 36.6
Sample C Male 30.8
Sample D Male 41.2
Midbrain
nTPM: 38.1
Samples: 4

Max nTPM: 50.2
Min nTPM: 29.4
Sample A Female 50.2
Sample B Female 41.6
Sample C Male 31.3
Sample D Male 29.4
Periaqueductal gray
nTPM: 31.4
Samples: 3

Max nTPM: 38.3
Min nTPM: 25.8
Sample B Female 38.3
Sample C Male 25.8
Sample D Male 30.0
Superior colliculi
nTPM: 32.2
Samples: 4

Max nTPM: 34.4
Min nTPM: 30.9
Sample A Female 30.9
Sample B Female 31.6
Sample C Male 31.9
Sample D Male 34.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.6
Samples: 4

Max nTPM: 15.9
Min nTPM: 12.2
Sample A Male 12.2
Sample B Male 14.2
Sample C Female 15.9
Sample D Female 15.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.7
69262264 Antisense, RP_050303_01_D07, Mouse strain C57BL/6J (56 days, male) 5.7

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