MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.0 nTPM
HPA Brain:22.8 nTPM
GTEx:11.0 nTPM
FANTOM5:79.3 Scaled Tags Per Million
Pig:21.1 nTPM
Mouse:19.1 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.4
1870 Female, age 42, unknown 24.9
1830 Male, age 51, unknown 21.0
1833 Male, age 53, unknown 20.9
2411 Female, age 72, unknown 20.6
2586 Male, age 75, left hemisphere 20.6
2019 Male, age 18, unknown 19.1
2666 Male, age 74, left hemisphere 17.4
2828 Female, age 72, unknown 16.9
2219 Male, age 76, both hemispheres 16.6
1827 Male, age 72, unknown 15.7
Dorsal raphe nucleus
nTPM: 22.4
2016 Female, age 72, unknown 24.9
2298 Female, age 72, unknown 22.4
2750 Male, age 76, both hemispheres 21.9
2047 Male, age 72, unknown 21.5
1828 Male, age 53, unknown 21.4
Inferior colliculus
nTPM: 21.2
2097 Female, age 72, unknown 23.8
1848 Female, age 42, unknown 21.3
1890 Male, age 53, unknown 20.5
2849 Male, age 72, unknown 19.1
Median raphe nucleus
nTPM: 21.0
2220 Male, age 76, midline 21.0
Periaquaductal grey, anterior
nTPM: 20.2
2502 Female, age 75, unknown 22.8
1947 Male, age 18, unknown 20.5
1795 Male, age 51, unknown 17.2
Periaquaductal grey, dorsal
nTPM: 22.8
1840 Male, age 53, unknown 25.0
2850 Male, age 76, both hemispheres 24.5
2464 Female, age 72, unknown 21.6
1831 Male, age 72, unknown 20.3
Periaquaductal grey, lateral
nTPM: 19.3
2140 Male, age 76, both hemispheres 20.9
2053 Male, age 18, unknown 19.7
2272 Male, age 74, both hemispheres 17.4
Pretectal area
nTPM: 18.8
2224 Female, age 72, unknown 23.1
2273 Male, age 74, both hemispheres 21.3
2825 Male, age 18, unknown 21.2
2316 Male, age 76, right hemisphere 19.8
2667 Female, age 75, unknown 19.7
1817 Female, age 42, unknown 19.5
1815 Male, age 53, unknown 19.1
1944 Female, age 72, unknown 16.4
2007 Male, age 72, unknown 16.2
2407 Male, age 75, both hemispheres 15.7
1816 Male, age 51, unknown 15.4
Red nucleus
nTPM: 21.3
1821 Female, age 72, unknown 25.7
1954 Female, age 42, unknown 24.8
1865 Male, age 51, unknown 23.5
1904 Male, age 53, unknown 22.9
2227 Male, age 72, unknown 22.0
2769 Male, age 72, unknown 22.0
2503 Female, age 72, unknown 21.7
2823 Male, age 76, right hemisphere 20.9
2725 Female, age 75, unknown 20.0
2785 Male, age 18, unknown 18.8
2584 Male, age 75, left hemisphere 17.4
2588 Male, age 74, left hemisphere 15.5
Substantia nigra
nTPM: 20.8
2241 Male, age 72, unknown 26.4
2699 Male, age 18, unknown 24.3
2409 Female, age 72, unknown 23.1
1851 Male, age 51, unknown 21.3
1889 Female, age 72, unknown 20.2
1916 Female, age 42, unknown 19.9
1941 Male, age 53, unknown 18.9
2583 Male, age 75, right hemisphere 18.2
2590 Female, age 75, unknown 18.1
2665 Male, age 74, both hemispheres 17.4
Superior colliculus
nTPM: 19.1
1995 Male, age 72, unknown 24.7
1913 Female, age 42, unknown 23.5
1839 Male, age 51, unknown 20.5
2587 Male, age 74, left hemisphere 19.7
2668 Female, age 75, unknown 18.9
1895 Male, age 76, right hemisphere 18.3
2664 Male, age 75, both hemispheres 17.6
2087 Female, age 72, unknown 16.8
1796 Male, age 53, unknown 16.0
2261 Male, age 18, unknown 15.3
Ventral tegmental area
nTPM: 20.1
2021 Male, age 53, unknown 21.0
1942 Male, age 51, unknown 20.8
2223 Female, age 72, unknown 20.5
1915 Female, age 42, unknown 20.1
2410 Female, age 72, unknown 20.1
2218 Male, age 76, both hemispheres 18.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.0
Samples: 139

Max nTPM: 20.0
Min nTPM: 6.5
Std nTPM: 2.6
Median nTPM: 10.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 20.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 18.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 18.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 17.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 16.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 16.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 16.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 15.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 15.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 15.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 15.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 79.3
FF:10158-103A5 76 years, female 79.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.5
Samples: 4

Max nTPM: 19.6
Min nTPM: 17.5
Sample A Female 18.7
Sample B Female 19.6
Sample C Male 17.5
Sample D Male 18.2
Midbrain
nTPM: 19.9
Samples: 4

Max nTPM: 24.2
Min nTPM: 17.2
Sample A Female 24.2
Sample B Female 18.6
Sample C Male 19.4
Sample D Male 17.2
Periaqueductal gray
nTPM: 16.8
Samples: 3

Max nTPM: 17.5
Min nTPM: 16.3
Sample B Female 16.5
Sample C Male 17.5
Sample D Male 16.3
Superior colliculi
nTPM: 21.1
Samples: 4

Max nTPM: 28.6
Min nTPM: 18.1
Sample A Female 18.8
Sample B Female 28.6
Sample C Male 18.7
Sample D Male 18.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.2
Samples: 4

Max nTPM: 20.1
Min nTPM: 18.2
Sample A Male 18.2
Sample B Male 20.1
Sample C Female 19.4
Sample D Female 19.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
69015254 Antisense, RP_050310_02_F02, Mouse strain C57BL/6J (56 days, male) 0.4

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