MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.9 nTPM
HPA Brain:21.4 nTPM
GTEx:4.9 nTPM
FANTOM5:59.8 Scaled Tags Per Million
Pig:6.7 nTPM
Mouse:12.8 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.4
2411 Female, age 72, unknown 19.3
1870 Female, age 42, unknown 18.3
1827 Male, age 72, unknown 16.5
1830 Male, age 51, unknown 15.9
1833 Male, age 53, unknown 14.4
2666 Male, age 74, left hemisphere 14.4
2828 Female, age 72, unknown 13.8
2019 Male, age 18, unknown 12.0
2219 Male, age 76, both hemispheres 10.7
2586 Male, age 75, left hemisphere 8.2
Dorsal raphe nucleus
nTPM: 13.2
1828 Male, age 53, unknown 16.5
2750 Male, age 76, both hemispheres 15.6
2047 Male, age 72, unknown 12.7
2016 Female, age 72, unknown 11.6
2298 Female, age 72, unknown 9.6
Inferior colliculus
nTPM: 14.9
1848 Female, age 42, unknown 25.5
2849 Male, age 72, unknown 15.2
2097 Female, age 72, unknown 10.1
1890 Male, age 53, unknown 8.9
Median raphe nucleus
nTPM: 8.5
2220 Male, age 76, midline 8.5
Periaquaductal grey, anterior
nTPM: 15.8
1947 Male, age 18, unknown 19.6
2502 Female, age 75, unknown 17.2
1795 Male, age 51, unknown 10.8
Periaquaductal grey, dorsal
nTPM: 9.5
2464 Female, age 72, unknown 13.7
1831 Male, age 72, unknown 9.7
2850 Male, age 76, both hemispheres 7.4
1840 Male, age 53, unknown 7.3
Periaquaductal grey, lateral
nTPM: 15.2
2053 Male, age 18, unknown 19.3
2272 Male, age 74, both hemispheres 14.5
2140 Male, age 76, both hemispheres 11.6
Pretectal area
nTPM: 15.0
2825 Male, age 18, unknown 24.5
2316 Male, age 76, right hemisphere 22.7
1816 Male, age 51, unknown 16.2
2273 Male, age 74, both hemispheres 14.6
2407 Male, age 75, both hemispheres 14.5
2224 Female, age 72, unknown 13.6
1944 Female, age 72, unknown 13.4
1817 Female, age 42, unknown 13.3
1815 Male, age 53, unknown 11.8
2007 Male, age 72, unknown 10.8
2667 Female, age 75, unknown 9.8
Red nucleus
nTPM: 21.4
1954 Female, age 42, unknown 32.5
1821 Female, age 72, unknown 27.4
2503 Female, age 72, unknown 24.8
1865 Male, age 51, unknown 24.4
2725 Female, age 75, unknown 23.2
2769 Male, age 72, unknown 22.4
2227 Male, age 72, unknown 22.1
1904 Male, age 53, unknown 21.9
2823 Male, age 76, right hemisphere 16.9
2588 Male, age 74, left hemisphere 15.8
2584 Male, age 75, left hemisphere 13.2
2785 Male, age 18, unknown 12.6
Substantia nigra
nTPM: 14.2
1941 Male, age 53, unknown 25.9
2590 Female, age 75, unknown 18.0
2583 Male, age 75, right hemisphere 17.8
2409 Female, age 72, unknown 17.6
1889 Female, age 72, unknown 13.4
1851 Male, age 51, unknown 11.2
2241 Male, age 72, unknown 10.5
1916 Female, age 42, unknown 10.2
2699 Male, age 18, unknown 8.9
2665 Male, age 74, both hemispheres 8.3
Superior colliculus
nTPM: 16.6
1895 Male, age 76, right hemisphere 23.7
2587 Male, age 74, left hemisphere 21.2
1839 Male, age 51, unknown 19.9
2087 Female, age 72, unknown 17.9
1995 Male, age 72, unknown 17.5
2261 Male, age 18, unknown 16.2
1913 Female, age 42, unknown 14.4
2668 Female, age 75, unknown 13.8
1796 Male, age 53, unknown 12.3
2664 Male, age 75, both hemispheres 8.6
Ventral tegmental area
nTPM: 14.0
2410 Female, age 72, unknown 18.4
2021 Male, age 53, unknown 15.6
2223 Female, age 72, unknown 12.8
1942 Male, age 51, unknown 12.5
2218 Male, age 76, both hemispheres 12.4
1915 Female, age 42, unknown 12.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.9
Samples: 139

Max nTPM: 29.9
Min nTPM: 0.5
Std nTPM: 4.1
Median nTPM: 3.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 29.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 18.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 18.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 18.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 17.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 15.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 13.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 13.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 13.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 11.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 11.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.8
FF:10158-103A5 76 years, female 59.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.9
Samples: 4

Max nTPM: 7.4
Min nTPM: 4.6
Sample A Female 5.8
Sample B Female 7.4
Sample C Male 4.6
Sample D Male 5.6
Midbrain
nTPM: 4.8
Samples: 4

Max nTPM: 6.9
Min nTPM: 3.0
Sample A Female 4.5
Sample B Female 6.9
Sample C Male 3.0
Sample D Male 4.6
Periaqueductal gray
nTPM: 6.7
Samples: 3

Max nTPM: 7.4
Min nTPM: 6.1
Sample B Female 7.4
Sample C Male 6.5
Sample D Male 6.1
Superior colliculi
nTPM: 6.2
Samples: 4

Max nTPM: 13.1
Min nTPM: 2.0
Sample A Female 5.8
Sample B Female 13.1
Sample C Male 2.0
Sample D Male 3.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.8
Samples: 4

Max nTPM: 14.8
Min nTPM: 10.2
Sample A Male 10.2
Sample B Male 13.0
Sample C Female 14.8
Sample D Female 13.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
939 Antisense, RP_Baylor_103026, Mouse strain C57BL/6J (56 days, male) 1.1
940 Antisense, RP_Baylor_103026, Mouse strain C57BL/6J (56 days, male) 0.7
941 Sense, RPS_Baylor_37040, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org