MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:202.2 nTPM
HPA Brain:231.2 nTPM
GTEx:202.2 nTPM
FANTOM5:153.6 Scaled Tags Per Million
Pig:281.7 nTPM
Mouse:308.1 nTPM
Allen mouse:15.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 231.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 183.6
2019 Male, age 18, unknown 226.4
2586 Male, age 75, left hemisphere 210.8
1827 Male, age 72, unknown 205.6
2411 Female, age 72, unknown 197.9
2828 Female, age 72, unknown 182.3
2666 Male, age 74, left hemisphere 179.1
2219 Male, age 76, both hemispheres 164.1
1870 Female, age 42, unknown 162.7
1833 Male, age 53, unknown 157.6
1830 Male, age 51, unknown 149.4
Dorsal raphe nucleus
nTPM: 193.9
2298 Female, age 72, unknown 233.3
1828 Male, age 53, unknown 215.5
2047 Male, age 72, unknown 207.9
2016 Female, age 72, unknown 160.8
2750 Male, age 76, both hemispheres 152.2
Inferior colliculus
nTPM: 190.0
2097 Female, age 72, unknown 231.5
1890 Male, age 53, unknown 203.6
1848 Female, age 42, unknown 178.8
2849 Male, age 72, unknown 145.9
Median raphe nucleus
nTPM: 151.4
2220 Male, age 76, midline 151.4
Periaquaductal grey, anterior
nTPM: 193.5
1795 Male, age 51, unknown 198.6
2502 Female, age 75, unknown 192.9
1947 Male, age 18, unknown 189.0
Periaquaductal grey, dorsal
nTPM: 150.8
1840 Male, age 53, unknown 168.2
1831 Male, age 72, unknown 149.7
2464 Female, age 72, unknown 145.8
2850 Male, age 76, both hemispheres 139.5
Periaquaductal grey, lateral
nTPM: 153.1
2272 Male, age 74, both hemispheres 161.6
2053 Male, age 18, unknown 159.8
2140 Male, age 76, both hemispheres 137.8
Pretectal area
nTPM: 202.5
2007 Male, age 72, unknown 271.5
1816 Male, age 51, unknown 258.8
1817 Female, age 42, unknown 242.8
1944 Female, age 72, unknown 222.3
2667 Female, age 75, unknown 208.1
1815 Male, age 53, unknown 201.3
2224 Female, age 72, unknown 176.0
2273 Male, age 74, both hemispheres 174.9
2316 Male, age 76, right hemisphere 160.9
2825 Male, age 18, unknown 160.4
2407 Male, age 75, both hemispheres 150.0
Red nucleus
nTPM: 186.8
1821 Female, age 72, unknown 243.1
2785 Male, age 18, unknown 220.8
2503 Female, age 72, unknown 213.6
2725 Female, age 75, unknown 199.8
2588 Male, age 74, left hemisphere 189.2
1954 Female, age 42, unknown 174.1
2227 Male, age 72, unknown 174.1
2769 Male, age 72, unknown 173.6
1865 Male, age 51, unknown 169.2
2584 Male, age 75, left hemisphere 165.4
1904 Male, age 53, unknown 159.5
2823 Male, age 76, right hemisphere 159.4
Substantia nigra
nTPM: 231.2
1916 Female, age 42, unknown 319.2
2241 Male, age 72, unknown 255.7
1851 Male, age 51, unknown 255.0
2665 Male, age 74, both hemispheres 240.1
1941 Male, age 53, unknown 235.0
1889 Female, age 72, unknown 234.3
2409 Female, age 72, unknown 202.8
2590 Female, age 75, unknown 199.0
2583 Male, age 75, right hemisphere 191.4
2699 Male, age 18, unknown 179.4
Superior colliculus
nTPM: 175.7
2087 Female, age 72, unknown 214.8
1796 Male, age 53, unknown 197.9
2587 Male, age 74, left hemisphere 192.5
2261 Male, age 18, unknown 180.8
2668 Female, age 75, unknown 177.2
1839 Male, age 51, unknown 173.7
2664 Male, age 75, both hemispheres 173.5
1895 Male, age 76, right hemisphere 168.2
1913 Female, age 42, unknown 143.4
1995 Male, age 72, unknown 135.3
Ventral tegmental area
nTPM: 192.1
2410 Female, age 72, unknown 259.7
1915 Female, age 42, unknown 222.0
2218 Male, age 76, both hemispheres 195.0
1942 Male, age 51, unknown 168.5
2021 Male, age 53, unknown 155.6
2223 Female, age 72, unknown 152.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 202.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 202.2
Samples: 139

Max nTPM: 399.4
Min nTPM: 110.9
Std nTPM: 50.8
Median nTPM: 194.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 399.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 365.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 353.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 352.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 326.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 317.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 302.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 296.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 287.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 284.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 283.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 153.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 153.6
FF:10158-103A5 76 years, female 153.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 281.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 202.0
Samples: 4

Max nTPM: 281.8
Min nTPM: 154.1
Sample A Female 281.8
Sample B Female 176.9
Sample C Male 195.0
Sample D Male 154.1
Midbrain
nTPM: 233.7
Samples: 4

Max nTPM: 285.6
Min nTPM: 194.7
Sample A Female 226.9
Sample B Female 194.7
Sample C Male 285.6
Sample D Male 227.5
Periaqueductal gray
nTPM: 166.4
Samples: 3

Max nTPM: 185.7
Min nTPM: 136.6
Sample B Female 185.7
Sample C Male 176.9
Sample D Male 136.6
Superior colliculi
nTPM: 281.7
Samples: 4

Max nTPM: 332.7
Min nTPM: 220.4
Sample A Female 320.1
Sample B Female 253.4
Sample C Male 332.7
Sample D Male 220.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 308.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 308.1
Samples: 4

Max nTPM: 317.1
Min nTPM: 296.6
Sample A Male 315.2
Sample B Male 303.4
Sample C Female 317.1
Sample D Female 296.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.4
972 Antisense, RP_Baylor_102959, Mouse strain C57BL/6J (56 days, male) 15.4
975 Antisense, RP_Baylor_102959, Mouse strain C57BL/6J (56 days, male) 14.3

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