MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.4 nTPM
HPA Brain:31.7 nTPM
GTEx:28.4 nTPM
FANTOM5:63.4 Scaled Tags Per Million
Pig:45.7 nTPM
Mouse:58.2 nTPM
Allen mouse:8.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.2
2019 Male, age 18, unknown 35.4
2411 Female, age 72, unknown 31.8
1827 Male, age 72, unknown 31.4
1870 Female, age 42, unknown 31.3
2586 Male, age 75, left hemisphere 31.1
2666 Male, age 74, left hemisphere 30.5
1830 Male, age 51, unknown 28.6
1833 Male, age 53, unknown 27.0
2828 Female, age 72, unknown 22.9
2219 Male, age 76, both hemispheres 22.3
Dorsal raphe nucleus
nTPM: 29.5
2750 Male, age 76, both hemispheres 34.4
2047 Male, age 72, unknown 29.9
2298 Female, age 72, unknown 28.2
2016 Female, age 72, unknown 28.0
1828 Male, age 53, unknown 26.9
Inferior colliculus
nTPM: 26.1
2097 Female, age 72, unknown 33.8
1890 Male, age 53, unknown 27.1
1848 Female, age 42, unknown 24.2
2849 Male, age 72, unknown 19.4
Median raphe nucleus
nTPM: 29.6
2220 Male, age 76, midline 29.6
Periaquaductal grey, anterior
nTPM: 31.7
1947 Male, age 18, unknown 34.9
2502 Female, age 75, unknown 33.8
1795 Male, age 51, unknown 26.6
Periaquaductal grey, dorsal
nTPM: 27.2
1840 Male, age 53, unknown 29.5
1831 Male, age 72, unknown 28.4
2464 Female, age 72, unknown 26.2
2850 Male, age 76, both hemispheres 24.9
Periaquaductal grey, lateral
nTPM: 25.6
2053 Male, age 18, unknown 26.7
2140 Male, age 76, both hemispheres 25.4
2272 Male, age 74, both hemispheres 24.6
Pretectal area
nTPM: 31.4
1817 Female, age 42, unknown 39.0
1815 Male, age 53, unknown 37.5
2007 Male, age 72, unknown 37.0
1944 Female, age 72, unknown 35.7
1816 Male, age 51, unknown 35.6
2667 Female, age 75, unknown 31.8
2273 Male, age 74, both hemispheres 29.0
2407 Male, age 75, both hemispheres 26.7
2224 Female, age 72, unknown 25.3
2316 Male, age 76, right hemisphere 24.3
2825 Male, age 18, unknown 23.4
Red nucleus
nTPM: 30.0
1865 Male, age 51, unknown 34.4
1821 Female, age 72, unknown 33.5
2503 Female, age 72, unknown 32.2
2785 Male, age 18, unknown 31.5
1954 Female, age 42, unknown 31.1
2584 Male, age 75, left hemisphere 30.0
1904 Male, age 53, unknown 29.1
2227 Male, age 72, unknown 29.0
2588 Male, age 74, left hemisphere 28.4
2769 Male, age 72, unknown 28.2
2823 Male, age 76, right hemisphere 26.6
2725 Female, age 75, unknown 26.4
Substantia nigra
nTPM: 30.6
2241 Male, age 72, unknown 34.2
1889 Female, age 72, unknown 33.8
1851 Male, age 51, unknown 33.5
2409 Female, age 72, unknown 33.5
1941 Male, age 53, unknown 31.4
2665 Male, age 74, both hemispheres 30.8
1916 Female, age 42, unknown 29.8
2583 Male, age 75, right hemisphere 28.7
2590 Female, age 75, unknown 26.2
2699 Male, age 18, unknown 23.9
Superior colliculus
nTPM: 28.9
2668 Female, age 75, unknown 34.1
2261 Male, age 18, unknown 32.3
2087 Female, age 72, unknown 31.5
1913 Female, age 42, unknown 30.5
2587 Male, age 74, left hemisphere 29.2
2664 Male, age 75, both hemispheres 28.9
1995 Male, age 72, unknown 26.7
1895 Male, age 76, right hemisphere 26.0
1839 Male, age 51, unknown 25.4
1796 Male, age 53, unknown 24.0
Ventral tegmental area
nTPM: 29.0
2223 Female, age 72, unknown 36.1
2021 Male, age 53, unknown 28.8
2410 Female, age 72, unknown 28.8
2218 Male, age 76, both hemispheres 28.3
1942 Male, age 51, unknown 26.7
1915 Female, age 42, unknown 25.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.4
Samples: 139

Max nTPM: 45.5
Min nTPM: 18.6
Std nTPM: 5.3
Median nTPM: 28.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 45.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 45.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 44.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 40.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 40.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 39.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 38.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 37.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 37.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 37.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 37.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 63.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 63.4
FF:10158-103A5 76 years, female 63.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 45.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 41.5
Samples: 4

Max nTPM: 54.8
Min nTPM: 26.7
Sample A Female 54.8
Sample B Female 36.0
Sample C Male 48.3
Sample D Male 26.7
Midbrain
nTPM: 44.6
Samples: 4

Max nTPM: 56.8
Min nTPM: 36.0
Sample A Female 36.0
Sample B Female 41.5
Sample C Male 56.8
Sample D Male 44.1
Periaqueductal gray
nTPM: 34.8
Samples: 3

Max nTPM: 39.1
Min nTPM: 31.6
Sample B Female 31.6
Sample C Male 39.1
Sample D Male 33.6
Superior colliculi
nTPM: 45.7
Samples: 4

Max nTPM: 61.6
Min nTPM: 33.0
Sample A Female 48.2
Sample B Female 33.0
Sample C Male 61.6
Sample D Male 40.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 58.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 58.2
Samples: 4

Max nTPM: 60.2
Min nTPM: 56.2
Sample A Male 60.2
Sample B Male 59.9
Sample C Female 56.2
Sample D Female 56.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.9
72739 Antisense, RP_040420_01_B12, Mouse strain C57BL/6J (56 days, male) 8.9
104826 Antisense, RP_040420_01_B12, Mouse strain C57BL/6J (56 days, male) 6.1

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