HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:22.6 nTPM
HPA Brain:53.3 nTPM
GTEx:22.6 nTPM
FANTOM5:72.7 Scaled Tags Per Million
Pig:30.7 nTPM
Mouse:28.9 nTPM
Allen mouse:7.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA051617
Glial cells Not detected
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 53.3
Sample id Sample description nTPM
Hippocampus
nTPM: 44.7
2148 Female, age 91, left hemisphere 50.5
2529 Female, age 94, left hemisphere 46.2
2621 Female, age 67, right hemisphere 45.6
1855 Male, age 76, left hemisphere 44.4
1898 Male, age 80, left hemisphere 42.6
1911 Female, age 85, right hemisphere 38.8
Dentate gyrus
nTPM: 48.5
2531 Female, age 67, both hemispheres 59.3
2246 Female, age 85, both hemispheres 50.0
2530 Female, age 94, left hemisphere 47.2
2010 Male, age 76, both hemispheres 45.2
2528 Male, age 74, both hemispheres 45.1
1927 Female, age 91, both hemispheres 44.2
Entorhinal gyrus
nTPM: 46.6
2764 Male, age 80, right hemisphere 52.4
1787 Male, age 76, left hemisphere 49.5
1938 Female, age 85, left hemisphere 46.7
2686 Male, age 75, right hemisphere 44.7
2613 Female, age 94, left hemisphere 43.8
2117 Female, age 91, right hemisphere 42.6
Hippocampus, CA1
nTPM: 51.5
2045 Male, age 76, both hemispheres 59.4
2082 Female, age 91, right hemisphere 55.3
2749 Male, age 80, left hemisphere 55.3
1873 Female, age 85, both hemispheres 44.3
2527 Male, age 74, both hemispheres 43.0
Hippocampus, CA2
nTPM: 43.6
1940 Female, age 85, left hemisphere 50.6
2113 Female, age 91, right hemisphere 44.6
1963 Male, age 80, left hemisphere 42.2
2437 Female, age 94, left hemisphere 42.1
1892 Male, age 76, both hemispheres 41.6
2249 Male, age 74, both hemispheres 40.5
Hippocampus, CA3
nTPM: 53.3
2620 Female, age 94, left hemisphere 65.7
2436 Male, age 74, both hemispheres 61.3
2861 Female, age 67, both hemispheres 58.0
2137 Male, age 80, left hemisphere 51.2
1867 Male, age 76, both hemispheres 42.2
1891 Female, age 85, both hemispheres 41.0
Parahippocampal cortex
nTPM: 43.9
1933 Female, age 85, both hemispheres 49.9
2532 Female, age 72, left hemisphere 49.1
2245 Female, age 91, both hemispheres 48.0
1850 Male, age 80, both hemispheres 45.3
2622 Female, age 67, right hemisphere 45.0
1990 Female, age 91, right hemisphere 41.8
2018 Male, age 76, both hemispheres 41.8
2250 Female, age 67, right hemisphere 41.7
2693 Female, age 94, both hemispheres 38.8
2692 Male, age 74, both hemispheres 37.5
Perirhinal gyrus
nTPM: 48.2
2521 Female, age 94, right hemisphere 51.3
1794 Male, age 80, right hemisphere 50.5
1847 Female, age 91, left hemisphere 49.8
1841 Female, age 85, right hemisphere 44.9
2848 Male, age 76, right hemisphere 44.3
Subiculum
nTPM: 43.0
1977 Female, age 85, both hemispheres 51.4
2729 Female, age 91, right hemisphere 45.1
2438 Female, age 94, left hemisphere 42.4
1901 Male, age 80, both hemispheres 41.5
2619 Male, age 74, both hemispheres 40.5
2042 Male, age 76, both hemispheres 37.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 22.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 22.6
Samples: 197

Max nTPM: 34.7
Min nTPM: 10.5
Std nTPM: 4.7
Median nTPM: 22.4
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 34.7
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 34.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 33.8
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 33.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 33.2
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 33.1
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 32.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 32.4
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 32.2
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 31.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 31.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 72.7
FF:10169-103B7 60 years, female 84.1
FF:10153-102I9 76 years, female 61.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 30.7
Pig sample Sample description nTPM
Subiculum
nTPM: 29.9
Samples: 4

Max nTPM: 41.0
Min nTPM: 22.7
Sample A Female 41.0
Sample B Female 25.4
Sample C Male 30.3
Sample D Male 22.7
Dorsal hippocampus
nTPM: 28.5
Samples: 4

Max nTPM: 33.3
Min nTPM: 23.1
Sample A Female 33.3
Sample B Female 29.3
Sample C Male 28.2
Sample D Male 23.1
Entorhinal cortex
nTPM: 30.7
Samples: 4

Max nTPM: 36.9
Min nTPM: 26.2
Sample A Female 36.9
Sample B Female 26.2
Sample C Male 32.1
Sample D Male 27.6
Ventral hippocampus
nTPM: 30.5
Samples: 4

Max nTPM: 39.6
Min nTPM: 21.4
Sample A Female 31.9
Sample B Female 21.4
Sample C Male 39.6
Sample D Male 29.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 28.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 28.9
Samples: 4

Max nTPM: 34.9
Min nTPM: 25.1
Sample A Male 26.6
Sample B Male 25.1
Sample C Female 29.1
Sample D Female 34.9
Hippocampal formation
nTPM: 28.7
Samples: 4

Max nTPM: 32.5
Min nTPM: 23.3
Sample A Male 23.3
Sample B Male 30.0
Sample C Female 32.5
Sample D Female 29.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.6
69734809 Antisense, RP_050503_01_C11, Mouse strain C57BL/6J (56 days, male) 7.6

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