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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
61.4
nTPM
Monaco:
33.7
nTPM
Schmiedel:
39.8
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
61.4
HPA sample
nTPM
gdT-cell nTPM: 40.2
Samples: 6
Max nTPM: 83.3
Min nTPM: 19.9
P10809_1007
27.4
P10809_1022
48.3
P10809_1041
83.3
P10809_1060
38.4
P10809_1077
24.1
P10809_1098
19.9
MAIT T-cell nTPM: 46.2
Samples: 6
Max nTPM: 68.1
Min nTPM: 25.6
P10809_1006
36.5
P10809_1024
68.1
P10809_1043
62.4
P10809_1062
42.5
P10809_1083
41.8
P10809_1097
25.6
Memory CD4 T-cell nTPM: 41.9
Samples: 6
Max nTPM: 55.2
Min nTPM: 32.4
P10809_1014
36.3
P10809_1026
55.2
P10809_1045
53.9
P10809_1064
38.2
P10809_1086
32.4
P10809_1113
35.3
Memory CD8 T-cell nTPM: 39.6
Samples: 5
Max nTPM: 59.8
Min nTPM: 26.5
P10809_1012
27.7
P10809_1027
46.6
P10809_1046
59.8
P10809_1065
37.3
P10809_1111
26.5
Naive CD4 T-cell nTPM: 61.4
Samples: 6
Max nTPM: 98.2
Min nTPM: 41.4
P10809_1015
47.2
P10809_1030
64.6
P10809_1049
98.2
P10809_1068
60.6
P10809_1085
56.2
P10809_1112
41.4
Naive CD8 T-cell nTPM: 53.8
Samples: 6
Max nTPM: 92.4
Min nTPM: 28.4
P10809_1016
51.6
P10809_1031
92.4
P10809_1050
62.3
P10809_1069
50.2
P10809_1087
28.4
P10809_1110
38.0
T-reg nTPM: 35.9
Samples: 6
Max nTPM: 47.9
Min nTPM: 23.1
P10809_1018
23.1
P10809_1037
42.8
P10809_1056
47.9
P10809_1075
44.8
P10809_1094
28.5
P10809_1106
28.2
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
33.7
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 22.7
Samples: 4
Max nTPM: 30.8
Min nTPM: 17.8
RHH5202_R3573
17.8
RHH5230_R3602
18.5
RHH5259_R3631
23.5
RHH5288_R3660
30.8
Effector memory CD8 T-cell nTPM: 13.2
Samples: 4
Max nTPM: 15.3
Min nTPM: 9.5
RHH5203_R3574
14.1
RHH5231_R3603
15.3
RHH5260_R3632
13.8
RHH5289_R3661
9.5
MAIT T-cell nTPM: 24.6
Samples: 4
Max nTPM: 36.1
Min nTPM: 15.6
RHH5233_R3605
20.7
RHH5205_R3576
15.6
RHH5262_R3634
26.0
RHH5297_R3663
36.1
Memory CD4 T-cell TFH nTPM: 24.8
Samples: 4
Max nTPM: 36.4
Min nTPM: 16.5
RHH5300_R3666
25.7
RHH5236_R3608
36.4
RHH5265_R3637
20.4
RHH5208_R3579
16.5
Memory CD4 T-cell Th1 nTPM: 27.9
Samples: 4
Max nTPM: 47.6
Min nTPM: 17.3
RHH5210_R3581
27.6
RHH5302_R3668
47.6
RHH5238_R3610
18.9
RHH5267_R3639
17.3
Memory CD4 T-cell Th1/Th17 nTPM: 29.8
Samples: 4
Max nTPM: 54.7
Min nTPM: 12.2
RHH5303_R3669
54.7
RHH5211_R3582
35.6
RHH5239_R3611
12.2
RHH5268_R3640
16.6
Memory CD4 T-cell Th17 nTPM: 23.3
Samples: 4
Max nTPM: 29.3
Min nTPM: 13.5
RHH5304_R3670
29.2
RHH5212_R3583
29.3
RHH5240_R3612
13.5
RHH5269_R3641
21.2
Memory CD4 T-cell Th2 nTPM: 25.2
Samples: 4
Max nTPM: 30.2
Min nTPM: 19.0
RHH5305_R3671
28.2
RHH5213_R3584
19.0
RHH5241_R3613
30.2
RHH5270_R3642
23.3
Naive CD4 T-cell nTPM: 33.7
Samples: 4
Max nTPM: 44.7
Min nTPM: 24.3
RHH5306_R3672
33.1
RHH5214_R3585
44.7
RHH5242_R3614
24.3
RHH5271_R3643
32.7
Naive CD8 T-cell nTPM: 27.6
Samples: 4
Max nTPM: 38.9
Min nTPM: 17.2
RHH5201_R3572
25.4
RHH5229_R3601
17.2
RHH5258_R3630
38.9
RHH5287_R3659
28.7
Non-Vd2 gdTCR nTPM: 20.0
Samples: 4
Max nTPM: 32.0
Min nTPM: 7.8
RHH5235_R3607
7.8
RHH5264_R3636
32.0
RHH5207_R3578
12.5
RHH5299_R3665
27.7
T-reg nTPM: 32.2
Samples: 4
Max nTPM: 52.1
Min nTPM: 16.5
RHH5301_R3667
52.1
RHH5237_R3609
35.5
RHH5266_R3638
16.5
RHH5209_R3580
24.6
Terminal effector memory CD4 T-cell nTPM: 16.1
Samples: 2
Max nTPM: 23.2
Min nTPM: 9.0
RHH5243_R3615
9.0
RHH5272_R3644
23.2
Terminal effector memory CD8 T-cell nTPM: 21.1
Samples: 4
Max nTPM: 36.1
Min nTPM: 9.2
RHH5232_R3604
9.2
RHH5204_R3575
28.0
RHH5261_R3633
11.0
RHH5296_R3662
36.1
Vd2 gdTCR nTPM: 29.2
Samples: 4
Max nTPM: 43.4
Min nTPM: 14.7
RHH5234_R3606
26.0
RHH5206_R3577
32.6
RHH5263_R3635
14.7
RHH5298_R3664
43.4
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
