MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.0 nTPM
HPA Brain:28.3 nTPM
GTEx:10.0 nTPM
FANTOM5:101.4 Scaled Tags Per Million
Pig:32.3 nTPM
Mouse:2.4 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.1
1830 Male, age 51, unknown 19.6
2666 Male, age 74, left hemisphere 18.5
2828 Female, age 72, unknown 18.1
2219 Male, age 76, both hemispheres 17.3
2019 Male, age 18, unknown 16.9
1833 Male, age 53, unknown 16.6
1870 Female, age 42, unknown 16.0
1827 Male, age 72, unknown 13.2
2586 Male, age 75, left hemisphere 12.5
2411 Female, age 72, unknown 12.3
Dorsal raphe nucleus
nTPM: 19.6
2016 Female, age 72, unknown 24.4
2750 Male, age 76, both hemispheres 21.4
2298 Female, age 72, unknown 18.9
1828 Male, age 53, unknown 18.4
2047 Male, age 72, unknown 14.9
Inferior colliculus
nTPM: 15.0
1890 Male, age 53, unknown 16.0
2097 Female, age 72, unknown 15.9
2849 Male, age 72, unknown 15.3
1848 Female, age 42, unknown 12.8
Median raphe nucleus
nTPM: 18.3
2220 Male, age 76, midline 18.3
Periaquaductal grey, anterior
nTPM: 10.8
1795 Male, age 51, unknown 12.8
1947 Male, age 18, unknown 11.6
2502 Female, age 75, unknown 7.8
Periaquaductal grey, dorsal
nTPM: 17.9
1831 Male, age 72, unknown 23.0
2850 Male, age 76, both hemispheres 20.4
1840 Male, age 53, unknown 16.4
2464 Female, age 72, unknown 11.6
Periaquaductal grey, lateral
nTPM: 20.5
2272 Male, age 74, both hemispheres 21.7
2140 Male, age 76, both hemispheres 20.1
2053 Male, age 18, unknown 19.7
Pretectal area
nTPM: 16.0
2407 Male, age 75, both hemispheres 27.7
2316 Male, age 76, right hemisphere 24.9
2273 Male, age 74, both hemispheres 20.4
1815 Male, age 53, unknown 16.2
1944 Female, age 72, unknown 14.6
1817 Female, age 42, unknown 14.4
2007 Male, age 72, unknown 13.6
2825 Male, age 18, unknown 13.2
2224 Female, age 72, unknown 12.7
2667 Female, age 75, unknown 10.1
1816 Male, age 51, unknown 8.1
Red nucleus
nTPM: 17.2
1865 Male, age 51, unknown 23.3
2725 Female, age 75, unknown 23.3
2503 Female, age 72, unknown 20.3
1904 Male, age 53, unknown 19.7
2769 Male, age 72, unknown 18.3
2584 Male, age 75, left hemisphere 16.9
2823 Male, age 76, right hemisphere 16.7
2227 Male, age 72, unknown 16.5
2785 Male, age 18, unknown 16.4
1954 Female, age 42, unknown 14.2
1821 Female, age 72, unknown 13.0
2588 Male, age 74, left hemisphere 7.8
Substantia nigra
nTPM: 28.3
2590 Female, age 75, unknown 56.0
2699 Male, age 18, unknown 38.8
2665 Male, age 74, both hemispheres 34.0
2583 Male, age 75, right hemisphere 26.9
2409 Female, age 72, unknown 26.6
1916 Female, age 42, unknown 24.4
1851 Male, age 51, unknown 22.1
2241 Male, age 72, unknown 21.2
1941 Male, age 53, unknown 19.7
1889 Female, age 72, unknown 13.4
Superior colliculus
nTPM: 18.1
1913 Female, age 42, unknown 28.8
1995 Male, age 72, unknown 25.0
2587 Male, age 74, left hemisphere 24.1
2664 Male, age 75, both hemispheres 22.3
1839 Male, age 51, unknown 17.7
2087 Female, age 72, unknown 14.6
1796 Male, age 53, unknown 13.9
2261 Male, age 18, unknown 11.8
1895 Male, age 76, right hemisphere 11.7
2668 Female, age 75, unknown 10.9
Ventral tegmental area
nTPM: 21.3
2021 Male, age 53, unknown 27.3
1915 Female, age 42, unknown 22.1
1942 Male, age 51, unknown 21.5
2218 Male, age 76, both hemispheres 20.4
2410 Female, age 72, unknown 19.1
2223 Female, age 72, unknown 17.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.0
Samples: 139

Max nTPM: 47.4
Min nTPM: 1.1
Std nTPM: 8.4
Median nTPM: 7.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 47.4
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 42.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 38.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 33.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 33.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 33.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 32.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 31.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 23.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 23.3
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 22.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 101.4
FF:10158-103A5 76 years, female 101.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.3
Samples: 4

Max nTPM: 40.5
Min nTPM: 26.0
Sample A Female 31.2
Sample B Female 26.0
Sample C Male 31.4
Sample D Male 40.5
Midbrain
nTPM: 29.6
Samples: 4

Max nTPM: 49.3
Min nTPM: 18.5
Sample A Female 49.3
Sample B Female 30.5
Sample C Male 20.2
Sample D Male 18.5
Periaqueductal gray
nTPM: 30.6
Samples: 3

Max nTPM: 31.0
Min nTPM: 30.1
Sample B Female 30.6
Sample C Male 31.0
Sample D Male 30.1
Superior colliculi
nTPM: 22.7
Samples: 4

Max nTPM: 26.2
Min nTPM: 15.4
Sample A Female 26.2
Sample B Female 15.4
Sample C Male 24.6
Sample D Male 24.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.4
Samples: 4

Max nTPM: 3.0
Min nTPM: 2.0
Sample A Male 3.0
Sample B Male 2.0
Sample C Female 2.1
Sample D Female 2.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
68444666 Antisense, RP_050111_02_C07, Mouse strain C57BL/6J (56 days, male) 1.9

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