MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.8 nTPM
HPA Brain:34.1 nTPM
GTEx:7.8 nTPM
FANTOM5:15.6 Scaled Tags Per Million
Pig:8.3 nTPM
Mouse:26.9 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.8
1827 Male, age 72, unknown 32.2
2019 Male, age 18, unknown 31.9
2411 Female, age 72, unknown 31.2
2586 Male, age 75, left hemisphere 28.7
2828 Female, age 72, unknown 28.6
1833 Male, age 53, unknown 28.4
2219 Male, age 76, both hemispheres 28.3
1830 Male, age 51, unknown 27.6
2666 Male, age 74, left hemisphere 26.0
1870 Female, age 42, unknown 25.0
Dorsal raphe nucleus
nTPM: 28.2
2298 Female, age 72, unknown 32.9
2047 Male, age 72, unknown 31.7
1828 Male, age 53, unknown 26.3
2750 Male, age 76, both hemispheres 25.8
2016 Female, age 72, unknown 24.3
Inferior colliculus
nTPM: 32.0
2849 Male, age 72, unknown 36.9
1848 Female, age 42, unknown 31.4
2097 Female, age 72, unknown 30.1
1890 Male, age 53, unknown 29.5
Median raphe nucleus
nTPM: 29.0
2220 Male, age 76, midline 29.0
Periaquaductal grey, anterior
nTPM: 29.7
2502 Female, age 75, unknown 32.6
1947 Male, age 18, unknown 29.6
1795 Male, age 51, unknown 27.0
Periaquaductal grey, dorsal
nTPM: 33.4
1840 Male, age 53, unknown 37.9
2850 Male, age 76, both hemispheres 34.5
2464 Female, age 72, unknown 34.1
1831 Male, age 72, unknown 26.9
Periaquaductal grey, lateral
nTPM: 34.1
2140 Male, age 76, both hemispheres 42.8
2272 Male, age 74, both hemispheres 31.5
2053 Male, age 18, unknown 28.1
Pretectal area
nTPM: 29.8
2007 Male, age 72, unknown 33.7
2316 Male, age 76, right hemisphere 32.9
1816 Male, age 51, unknown 32.0
2825 Male, age 18, unknown 30.0
1815 Male, age 53, unknown 29.9
1944 Female, age 72, unknown 29.1
2667 Female, age 75, unknown 28.6
1817 Female, age 42, unknown 28.2
2224 Female, age 72, unknown 28.2
2273 Male, age 74, both hemispheres 28.2
2407 Male, age 75, both hemispheres 26.9
Red nucleus
nTPM: 26.6
2584 Male, age 75, left hemisphere 30.7
2588 Male, age 74, left hemisphere 30.5
2725 Female, age 75, unknown 30.2
2503 Female, age 72, unknown 29.2
2785 Male, age 18, unknown 28.4
1954 Female, age 42, unknown 27.5
1821 Female, age 72, unknown 25.7
2823 Male, age 76, right hemisphere 25.3
1865 Male, age 51, unknown 24.7
2769 Male, age 72, unknown 23.0
2227 Male, age 72, unknown 22.3
1904 Male, age 53, unknown 21.7
Substantia nigra
nTPM: 28.3
1941 Male, age 53, unknown 32.7
1916 Female, age 42, unknown 32.6
2241 Male, age 72, unknown 31.4
2590 Female, age 75, unknown 29.0
1889 Female, age 72, unknown 28.7
2665 Male, age 74, both hemispheres 27.7
1851 Male, age 51, unknown 27.1
2409 Female, age 72, unknown 26.1
2583 Male, age 75, right hemisphere 24.7
2699 Male, age 18, unknown 23.5
Superior colliculus
nTPM: 28.0
1895 Male, age 76, right hemisphere 33.1
2261 Male, age 18, unknown 33.0
1796 Male, age 53, unknown 30.6
1839 Male, age 51, unknown 30.5
2587 Male, age 74, left hemisphere 29.0
2087 Female, age 72, unknown 27.7
2664 Male, age 75, both hemispheres 26.3
1995 Male, age 72, unknown 24.8
2668 Female, age 75, unknown 22.3
1913 Female, age 42, unknown 22.1
Ventral tegmental area
nTPM: 26.4
1915 Female, age 42, unknown 30.6
1942 Male, age 51, unknown 28.2
2218 Male, age 76, both hemispheres 26.7
2410 Female, age 72, unknown 26.7
2021 Male, age 53, unknown 25.1
2223 Female, age 72, unknown 21.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.8
Samples: 139

Max nTPM: 17.3
Min nTPM: 4.1
Std nTPM: 1.9
Median nTPM: 7.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 17.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 14.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 13.2
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 12.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 12.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 12.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 12.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 12.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 11.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 10.8
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 10.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.6
FF:10158-103A5 76 years, female 15.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.5
Samples: 4

Max nTPM: 8.6
Min nTPM: 6.8
Sample A Female 7.7
Sample B Female 8.6
Sample C Male 7.0
Sample D Male 6.8
Midbrain
nTPM: 8.1
Samples: 4

Max nTPM: 9.4
Min nTPM: 7.3
Sample A Female 7.3
Sample B Female 7.3
Sample C Male 9.4
Sample D Male 8.4
Periaqueductal gray
nTPM: 7.9
Samples: 3

Max nTPM: 8.4
Min nTPM: 7.6
Sample B Female 7.6
Sample C Male 8.4
Sample D Male 7.6
Superior colliculi
nTPM: 8.3
Samples: 4

Max nTPM: 8.9
Min nTPM: 7.5
Sample A Female 8.1
Sample B Female 8.7
Sample C Male 7.5
Sample D Male 8.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.9
Samples: 4

Max nTPM: 28.2
Min nTPM: 25.7
Sample A Male 25.7
Sample B Male 28.2
Sample C Female 27.4
Sample D Female 26.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68117987 Antisense, RP_040929_01_H05, Mouse strain C57BL/6J (56 days, male) 0.2

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