MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.1 nTPM
HPA Brain:31.5 nTPM
GTEx:37.1 nTPM
FANTOM5:78.9 Scaled Tags Per Million
Pig:39.0 nTPM
Mouse:46.8 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.7
2019 Male, age 18, unknown 29.3
2411 Female, age 72, unknown 28.6
1870 Female, age 42, unknown 26.5
2219 Male, age 76, both hemispheres 26.1
2828 Female, age 72, unknown 25.0
1833 Male, age 53, unknown 24.9
2666 Male, age 74, left hemisphere 23.3
1830 Male, age 51, unknown 23.1
1827 Male, age 72, unknown 22.5
2586 Male, age 75, left hemisphere 18.3
Dorsal raphe nucleus
nTPM: 26.9
2750 Male, age 76, both hemispheres 31.7
1828 Male, age 53, unknown 28.1
2298 Female, age 72, unknown 27.8
2047 Male, age 72, unknown 25.8
2016 Female, age 72, unknown 20.9
Inferior colliculus
nTPM: 20.7
2097 Female, age 72, unknown 23.1
1890 Male, age 53, unknown 21.7
1848 Female, age 42, unknown 19.7
2849 Male, age 72, unknown 18.3
Median raphe nucleus
nTPM: 31.5
2220 Male, age 76, midline 31.5
Periaquaductal grey, anterior
nTPM: 24.4
1795 Male, age 51, unknown 26.7
1947 Male, age 18, unknown 23.4
2502 Female, age 75, unknown 23.3
Periaquaductal grey, dorsal
nTPM: 23.2
2850 Male, age 76, both hemispheres 29.7
1831 Male, age 72, unknown 22.3
2464 Female, age 72, unknown 21.9
1840 Male, age 53, unknown 18.8
Periaquaductal grey, lateral
nTPM: 25.1
2272 Male, age 74, both hemispheres 28.2
2053 Male, age 18, unknown 25.7
2140 Male, age 76, both hemispheres 21.5
Pretectal area
nTPM: 28.8
1944 Female, age 72, unknown 45.5
1816 Male, age 51, unknown 36.5
1817 Female, age 42, unknown 34.0
1815 Male, age 53, unknown 31.8
2007 Male, age 72, unknown 31.5
2667 Female, age 75, unknown 28.8
2273 Male, age 74, both hemispheres 25.5
2224 Female, age 72, unknown 22.3
2316 Male, age 76, right hemisphere 20.5
2407 Male, age 75, both hemispheres 20.4
2825 Male, age 18, unknown 20.3
Red nucleus
nTPM: 25.3
1821 Female, age 72, unknown 30.4
2725 Female, age 75, unknown 29.0
2823 Male, age 76, right hemisphere 28.8
1865 Male, age 51, unknown 28.1
1904 Male, age 53, unknown 26.4
2503 Female, age 72, unknown 26.3
1954 Female, age 42, unknown 26.2
2785 Male, age 18, unknown 24.6
2769 Male, age 72, unknown 23.5
2227 Male, age 72, unknown 21.8
2588 Male, age 74, left hemisphere 21.3
2584 Male, age 75, left hemisphere 17.7
Substantia nigra
nTPM: 30.2
2241 Male, age 72, unknown 40.5
1916 Female, age 42, unknown 38.6
1941 Male, age 53, unknown 32.2
1851 Male, age 51, unknown 32.1
1889 Female, age 72, unknown 30.7
2699 Male, age 18, unknown 29.8
2409 Female, age 72, unknown 28.6
2590 Female, age 75, unknown 24.1
2665 Male, age 74, both hemispheres 23.4
2583 Male, age 75, right hemisphere 22.3
Superior colliculus
nTPM: 26.0
2087 Female, age 72, unknown 31.5
2261 Male, age 18, unknown 30.4
1913 Female, age 42, unknown 30.2
2587 Male, age 74, left hemisphere 28.8
2668 Female, age 75, unknown 27.7
1995 Male, age 72, unknown 26.5
1796 Male, age 53, unknown 23.2
1895 Male, age 76, right hemisphere 21.3
2664 Male, age 75, both hemispheres 21.1
1839 Male, age 51, unknown 19.2
Ventral tegmental area
nTPM: 28.1
2410 Female, age 72, unknown 33.6
2218 Male, age 76, both hemispheres 30.1
2223 Female, age 72, unknown 29.0
1915 Female, age 42, unknown 27.7
2021 Male, age 53, unknown 25.5
1942 Male, age 51, unknown 22.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.1
Samples: 139

Max nTPM: 50.9
Min nTPM: 26.4
Std nTPM: 4.8
Median nTPM: 36.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 50.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 50.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 50.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 49.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 48.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 46.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 45.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 45.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 44.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 44.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 44.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 78.9
FF:10158-103A5 76 years, female 78.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.3
Samples: 4

Max nTPM: 46.8
Min nTPM: 24.5
Sample A Female 46.8
Sample B Female 28.7
Sample C Male 37.0
Sample D Male 24.5
Midbrain
nTPM: 38.9
Samples: 4

Max nTPM: 52.6
Min nTPM: 31.0
Sample A Female 38.5
Sample B Female 33.5
Sample C Male 52.6
Sample D Male 31.0
Periaqueductal gray
nTPM: 27.7
Samples: 3

Max nTPM: 32.1
Min nTPM: 24.8
Sample B Female 24.8
Sample C Male 32.1
Sample D Male 26.3
Superior colliculi
nTPM: 39.0
Samples: 4

Max nTPM: 45.5
Min nTPM: 32.4
Sample A Female 41.6
Sample B Female 36.6
Sample C Male 45.5
Sample D Male 32.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.8
Samples: 4

Max nTPM: 49.9
Min nTPM: 42.4
Sample A Male 42.4
Sample B Male 45.4
Sample C Female 49.6
Sample D Female 49.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
68563019 Antisense, RP_050120_02_H12, Mouse strain C57BL/6J (56 days, male) 0.9

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