BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:6.8 nTPM
HPA Brain:43.5 nTPM
GTEx:6.8 nTPM
FANTOM5:91.8 Scaled Tags Per Million
Pig:32.4 nTPM
Mouse:36.7 nTPM
Allen mouse:5.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA040718
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 43.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 43.5
1857 Female, age 85, left hemisphere 52.2
1854 Male, age 80, left hemisphere 47.5
2481 Female, age 94, left hemisphere 45.5
2846 Female, age 79, unknown 43.5
1781 Male, age 74, unknown 42.8
2288 Male, age 75, left hemisphere 41.9
2290 Female, age 72, unknown 39.6
2289 Male, age 61, right hemisphere 35.0
Globus pallidus, externus
nTPM: 38.7
1996 Male, age 80, right hemisphere 48.5
2395 Male, age 75, both hemispheres 44.9
2772 Female, age 79, unknown 38.3
2567 Female, age 72, unknown 33.8
2646 Male, age 61, right hemisphere 28.1
Globus pallidus, internus
nTPM: 40.2
2287 Male, age 75, right hemisphere 47.3
2778 Female, age 91, both hemispheres 42.4
1818 Male, age 74, unknown 41.4
2037 Male, age 80, right hemisphere 39.6
2566 Female, age 72, unknown 37.8
2483 Female, age 94, right hemisphere 37.4
2111 Female, age 85, right hemisphere 35.5
Nucleus accumbens
nTPM: 42.5
1856 Female, age 91, right hemisphere 47.7
2391 Female, age 94, left hemisphere 46.9
2698 Female, age 72, unknown 44.5
2824 Male, age 61, right hemisphere 44.0
2286 Male, age 75, left hemisphere 43.4
1806 Female, age 85, left hemisphere 42.3
1783 Male, age 74, unknown 40.1
2732 Male, age 80, right hemisphere 31.6
Nucleus basalis of Meynert
nTPM: 38.3
2821 Male, age 75, both hemispheres 46.8
2393 Male, age 80, right hemisphere 41.5
2484 Female, age 94, left hemisphere 38.3
2569 Male, age 61, both hemispheres 26.5
Nucleus of the diagonal band
nTPM: 38.0
1812 Female, age 91, both hemispheres 44.0
2029 Male, age 61, right hemisphere 41.0
2775 Male, age 80, right hemisphere 38.3
2195 Female, age 85, both hemispheres 34.8
1979 Male, age 74, unknown 31.6
Putamen
nTPM: 41.5
1937 Female, age 91, right hemisphere 48.3
1838 Male, age 80, right hemisphere 46.0
2482 Female, age 94, left hemisphere 42.6
1829 Male, age 74, unknown 41.5
2466 Female, age 79, unknown 41.0
2647 Male, age 75, left hemisphere 35.8
2489 Female, age 72, unknown 35.6
Septal nuclei
nTPM: 36.6
2031 Female, age 72, unknown 46.0
2009 Female, age 91, both hemispheres 41.0
2629 Female, age 94, right hemisphere 38.2
1960 Male, age 74, unknown 33.7
2199 Male, age 80, right hemisphere 33.1
2059 Female, age 85, both hemispheres 32.1
2394 Male, age 61, left hemisphere 31.9
Stria terminalis, bed nucleus
nTPM: 34.6
1974 Female, age 91, both hemispheres 37.8
2486 Female, age 94, both hemispheres 36.3
2201 Male, age 74, unknown 29.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 6.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 6.8
Samples: 246

Max nTPM: 15.7
Min nTPM: 2.6
Std nTPM: 1.4
Median nTPM: 6.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 15.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 10.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 10.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 10.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 10.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 10.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 9.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 9.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 9.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 9.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 9.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 6.6
Samples: 246

Max nTPM: 11.1
Min nTPM: 3.8
Std nTPM: 1.1
Median nTPM: 6.6
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 11.1
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 10.1
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 9.8
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 9.7
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 9.5
GTEX-14JG1-0011-R6b-SM-5YYAU 40-49 years, male 9.2
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 9.2
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 9.1
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 8.6
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 8.6
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 8.5
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Brain - Putamen (basal ganglia)
Average nTPM: 6.8
Samples: 205

Max nTPM: 11.8
Min nTPM: 3.3
Std nTPM: 1.1
Median nTPM: 6.8
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 11.8
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 10.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 10.0
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 9.8
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 9.2
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 9.0
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 9.0
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 8.8
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 8.7
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 8.7
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 8.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 91.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 83.1
FF:10164-103B2 76 years, female 83.1
Nucleus accumbens
Scaled Tags Per Million: 80.9
FF:10037-101F1 23-56 years, mixed 80.9
Putamen
Scaled Tags Per Million: 91.8
FF:10176-103C5 60 years, female 91.8
Globus pallidus
Scaled Tags Per Million: 67.7
FF:10161-103A8 76 years, female 78.9
FF:10175-103C4 60 years, female 56.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 32.4
Pig sample Sample description nTPM
Caudate
nTPM: 26.5
Samples: 4

Max nTPM: 28.0
Min nTPM: 25.7
Sample A Female 28.0
Sample B Female 25.7
Sample C Male 26.3
Sample D Male 26.1
Putamen
nTPM: 32.4
Samples: 4

Max nTPM: 40.0
Min nTPM: 28.1
Sample A Female 32.5
Sample B Female 28.1
Sample C Male 40.0
Sample D Male 28.8
Septum
nTPM: 30.8
Samples: 4

Max nTPM: 34.7
Min nTPM: 28.0
Sample A Female 31.1
Sample B Female 28.0
Sample C Male 34.7
Sample D Male 29.5
Ventral pallidum
nTPM: 29.8
Samples: 4

Max nTPM: 30.7
Min nTPM: 29.3
Sample A Female 29.3
Sample B Female 30.0
Sample C Male 29.3
Sample D Male 30.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 36.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 36.7
Samples: 4

Max nTPM: 41.0
Min nTPM: 34.4
Sample A Male 41.0
Sample B Male 35.4
Sample C Female 34.4
Sample D Female 35.8
Septum
nTPM: 29.7
Samples: 4

Max nTPM: 31.2
Min nTPM: 27.9
Sample A Male 31.2
Sample B Male 27.9
Sample C Female 30.6
Sample D Female 29.2
Ventral forebrain
nTPM: 34.1
Samples: 4

Max nTPM: 34.7
Min nTPM: 32.9
Sample A Male 34.4
Sample B Male 34.3
Sample C Female 32.9
Sample D Female 34.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.3
68498253 Antisense, RP_050113_01_F01, Mouse strain C57BL/6J (56 days, male) 5.3
Pallidum
Expression energy: 3.5
68498253 Antisense, RP_050113_01_F01, Mouse strain C57BL/6J (56 days, male) 3.5

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