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SYNJ2
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  • SYNJ2
PROTEIN SUMMARY SECTION OVERVIEW GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SYNJ2
Synonyms INPP5H
Gene descriptioni

Full gene name according to HGNC.

Synaptojanin 2
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Metabolic proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 6
Cytoband q25.3
Chromosome location (bp) 157981863 - 158099176
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

6
Ensembl ENSG00000078269 (version 109)
Entrez gene 8871
HGNC HGNC:11504
UniProt O15056 (UniProt - Evidence at protein level)
neXtProt NX_O15056
GeneCards SYNJ2
Antibodypedia SYNJ2 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Inositol 5-phosphatase which may be involved in distinct membrane trafficking and signal transduction pathways. May mediate the inhibitory effect of Rac1 on endocytosis.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Hydrolase, RNA-binding
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Lipid metabolism
Gene summary (Entrez)i

Useful information about the gene from Entrez

The gene is a member of the inositol-polyphosphate 5-phosphatase family. The encoded protein interacts with the ras-related C3 botulinum toxin substrate 1, which causes translocation of the encoded protein to the plasma membrane where it inhibits clathrin-mediated endocytosis. Alternative splicing results in multiple transcript variants. [provided by RefSeq, May 2010]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SYNJ2-201
ENSP00000347792
ENST00000355585
O15056
[Direct mapping] Synaptojanin-2
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Metabolic proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003723 [RNA binding]
GO:0003824 [catalytic activity]
GO:0004438 [phosphatidylinositol-3-phosphatase activity]
GO:0004439 [phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0005856 [cytoskeleton]
GO:0005886 [plasma membrane]
GO:0006629 [lipid metabolic process]
GO:0006661 [phosphatidylinositol biosynthetic process]
GO:0007420 [brain development]
GO:0016020 [membrane]
GO:0016787 [hydrolase activity]
GO:0016791 [phosphatase activity]
GO:0017124 [SH3 domain binding]
GO:0034595 [phosphatidylinositol phosphate 5-phosphatase activity]
GO:0034596 [phosphatidylinositol phosphate 4-phosphatase activity]
GO:0036092 [phosphatidylinositol-3-phosphate biosynthetic process]
GO:0042995 [cell projection]
GO:0043813 [phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity]
GO:0045121 [membrane raft]
GO:0045202 [synapse]
GO:0046855 [inositol phosphate dephosphorylation]
GO:0046856 [phosphatidylinositol dephosphorylation]
GO:0048471 [perinuclear region of cytoplasm]
GO:0048488 [synaptic vesicle endocytosis]
GO:0052629 [phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity]
GO:0052866 [phosphatidylinositol phosphate phosphatase activity]
GO:0061024 [membrane organization]
GO:0098793 [presynapse]
Show all
1496 aa
165.5 kDa
No 0
SYNJ2-203
ENSP00000356080
ENST00000367113
H7BY56
[Direct mapping] Synaptojanin-2
Show all
Metabolic proteins
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0006661 [phosphatidylinositol biosynthetic process]
GO:0016791 [phosphatase activity]
GO:0034595 [phosphatidylinositol phosphate 5-phosphatase activity]
GO:0046856 [phosphatidylinositol dephosphorylation]
Show all
136 aa
14.9 kDa
No 0
SYNJ2-204
ENSP00000356089
ENST00000367122
E7ER60
[Direct mapping] Synaptojanin-2
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003723 [RNA binding]
GO:0016791 [phosphatase activity]
GO:0034595 [phosphatidylinositol phosphate 5-phosphatase activity]
GO:0046855 [inositol phosphate dephosphorylation]
GO:0046856 [phosphatidylinositol dephosphorylation]
GO:0052866 [phosphatidylinositol phosphate phosphatase activity]
Show all
839 aa
92.3 kDa
No 0
SYNJ2-205
ENSP00000411202
ENST00000449320
Q5TA15
[Direct mapping] Synaptojanin-2
Show all
Metabolic proteins
   MEMSAT3 predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0006661 [phosphatidylinositol biosynthetic process]
GO:0016791 [phosphatase activity]
GO:0034595 [phosphatidylinositol phosphate 5-phosphatase activity]
GO:0046856 [phosphatidylinositol dephosphorylation]
Show all
136 aa
15.2 kDa
No 0
SYNJ2-207
ENSP00000492369
ENST00000638626
A0A1W2PR85
[Direct mapping] Phosphoinositide 5-phosphatase
Show all
Metabolic proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003723 [RNA binding]
GO:0003824 [catalytic activity]
GO:0004439 [phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity]
GO:0006629 [lipid metabolic process]
GO:0006661 [phosphatidylinositol biosynthetic process]
GO:0016787 [hydrolase activity]
GO:0016791 [phosphatase activity]
GO:0034595 [phosphatidylinositol phosphate 5-phosphatase activity]
GO:0046855 [inositol phosphate dephosphorylation]
GO:0046856 [phosphatidylinositol dephosphorylation]
GO:0052866 [phosphatidylinositol phosphate phosphatase activity]
Show all
1259 aa
139.3 kDa
No 0
SYNJ2-208
ENSP00000492532
ENST00000640338
O15056
[Direct mapping] Synaptojanin-2
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Metabolic proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003723 [RNA binding]
GO:0003824 [catalytic activity]
GO:0004438 [phosphatidylinositol-3-phosphatase activity]
GO:0004439 [phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0005856 [cytoskeleton]
GO:0005886 [plasma membrane]
GO:0006629 [lipid metabolic process]
GO:0006661 [phosphatidylinositol biosynthetic process]
GO:0007420 [brain development]
GO:0016020 [membrane]
GO:0016787 [hydrolase activity]
GO:0016791 [phosphatase activity]
GO:0017124 [SH3 domain binding]
GO:0034595 [phosphatidylinositol phosphate 5-phosphatase activity]
GO:0034596 [phosphatidylinositol phosphate 4-phosphatase activity]
GO:0036092 [phosphatidylinositol-3-phosphate biosynthetic process]
GO:0042995 [cell projection]
GO:0043813 [phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity]
GO:0045121 [membrane raft]
GO:0045202 [synapse]
GO:0046855 [inositol phosphate dephosphorylation]
GO:0046856 [phosphatidylinositol dephosphorylation]
GO:0048471 [perinuclear region of cytoplasm]
GO:0048488 [synaptic vesicle endocytosis]
GO:0052629 [phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity]
GO:0052866 [phosphatidylinositol phosphate phosphatase activity]
GO:0061024 [membrane organization]
GO:0098793 [presynapse]
Show all
1288 aa
143.4 kDa
No 0

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