MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:88.2 nTPM
HPA Brain:117.5 nTPM
GTEx:88.2 nTPM
FANTOM5:63.1 Scaled Tags Per Million
Pig:74.3 nTPM
Mouse:180.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 117.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 104.4
2666 Male, age 74, left hemisphere 116.2
2586 Male, age 75, left hemisphere 111.3
1833 Male, age 53, unknown 109.3
1830 Male, age 51, unknown 107.0
2019 Male, age 18, unknown 106.0
2411 Female, age 72, unknown 104.3
2219 Male, age 76, both hemispheres 100.3
1870 Female, age 42, unknown 99.7
1827 Male, age 72, unknown 95.5
2828 Female, age 72, unknown 94.4
Dorsal raphe nucleus
nTPM: 112.8
2047 Male, age 72, unknown 119.3
1828 Male, age 53, unknown 119.2
2016 Female, age 72, unknown 111.5
2750 Male, age 76, both hemispheres 109.5
2298 Female, age 72, unknown 104.5
Inferior colliculus
nTPM: 105.3
1890 Male, age 53, unknown 109.9
2849 Male, age 72, unknown 105.9
1848 Female, age 42, unknown 103.7
2097 Female, age 72, unknown 101.7
Median raphe nucleus
nTPM: 111.4
2220 Male, age 76, midline 111.4
Periaquaductal grey, anterior
nTPM: 96.5
1947 Male, age 18, unknown 100.3
2502 Female, age 75, unknown 99.2
1795 Male, age 51, unknown 90.1
Periaquaductal grey, dorsal
nTPM: 107.1
2850 Male, age 76, both hemispheres 117.5
1840 Male, age 53, unknown 111.6
2464 Female, age 72, unknown 103.5
1831 Male, age 72, unknown 95.7
Periaquaductal grey, lateral
nTPM: 98.7
2140 Male, age 76, both hemispheres 109.4
2053 Male, age 18, unknown 95.9
2272 Male, age 74, both hemispheres 90.9
Pretectal area
nTPM: 99.4
2407 Male, age 75, both hemispheres 110.1
1815 Male, age 53, unknown 103.7
1817 Female, age 42, unknown 103.3
1944 Female, age 72, unknown 101.8
2224 Female, age 72, unknown 99.8
2316 Male, age 76, right hemisphere 98.5
1816 Male, age 51, unknown 97.8
2007 Male, age 72, unknown 97.3
2273 Male, age 74, both hemispheres 96.1
2825 Male, age 18, unknown 95.5
2667 Female, age 75, unknown 89.6
Red nucleus
nTPM: 105.2
1954 Female, age 42, unknown 110.3
2588 Male, age 74, left hemisphere 109.9
1821 Female, age 72, unknown 109.8
2584 Male, age 75, left hemisphere 108.3
2227 Male, age 72, unknown 108.0
2725 Female, age 75, unknown 107.9
2823 Male, age 76, right hemisphere 105.6
2503 Female, age 72, unknown 104.0
1865 Male, age 51, unknown 101.6
2769 Male, age 72, unknown 101.4
1904 Male, age 53, unknown 98.8
2785 Male, age 18, unknown 97.0
Substantia nigra
nTPM: 117.5
2241 Male, age 72, unknown 147.6
2699 Male, age 18, unknown 140.2
1851 Male, age 51, unknown 123.1
1916 Female, age 42, unknown 118.5
2665 Male, age 74, both hemispheres 116.9
1941 Male, age 53, unknown 109.9
2590 Female, age 75, unknown 109.0
1889 Female, age 72, unknown 108.2
2583 Male, age 75, right hemisphere 101.2
2409 Female, age 72, unknown 99.9
Superior colliculus
nTPM: 100.0
2668 Female, age 75, unknown 111.8
2587 Male, age 74, left hemisphere 110.0
2664 Male, age 75, both hemispheres 109.2
1839 Male, age 51, unknown 102.9
2087 Female, age 72, unknown 97.4
1895 Male, age 76, right hemisphere 97.0
1913 Female, age 42, unknown 94.9
1796 Male, age 53, unknown 93.5
1995 Male, age 72, unknown 92.6
2261 Male, age 18, unknown 90.7
Ventral tegmental area
nTPM: 113.6
2218 Male, age 76, both hemispheres 118.9
2223 Female, age 72, unknown 115.6
1942 Male, age 51, unknown 114.0
1915 Female, age 42, unknown 113.8
2410 Female, age 72, unknown 111.1
2021 Male, age 53, unknown 108.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 88.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 88.2
Samples: 139

Max nTPM: 143.7
Min nTPM: 53.3
Std nTPM: 19.9
Median nTPM: 85.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 143.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 142.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 140.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 133.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 132.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 130.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 127.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 126.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 125.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 124.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 120.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 63.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 63.1
FF:10158-103A5 76 years, female 63.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 74.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 74.3
Samples: 4

Max nTPM: 85.1
Min nTPM: 63.2
Sample A Female 85.1
Sample B Female 65.5
Sample C Male 83.5
Sample D Male 63.2
Midbrain
nTPM: 72.4
Samples: 4

Max nTPM: 79.3
Min nTPM: 57.5
Sample A Female 57.5
Sample B Female 74.0
Sample C Male 78.7
Sample D Male 79.3
Periaqueductal gray
nTPM: 71.3
Samples: 3

Max nTPM: 79.4
Min nTPM: 63.5
Sample B Female 70.9
Sample C Male 79.4
Sample D Male 63.5
Superior colliculi
nTPM: 69.0
Samples: 4

Max nTPM: 74.2
Min nTPM: 55.3
Sample A Female 74.2
Sample B Female 55.3
Sample C Male 72.3
Sample D Male 74.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 180.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 180.3
Samples: 4

Max nTPM: 188.5
Min nTPM: 171.1
Sample A Male 171.1
Sample B Male 180.8
Sample C Female 188.5
Sample D Female 180.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
73927607 Antisense, RP_051219_01_E05, Mouse strain C57BL/6J (56 days, male) 0.0

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