MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.0 nTPM
HPA Brain:27.3 nTPM
GTEx:9.0 nTPM
FANTOM5:29.4 Scaled Tags Per Million
Pig:26.2 nTPM
Mouse:9.3 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.2
1833 Male, age 53, unknown 29.7
1830 Male, age 51, unknown 28.0
2219 Male, age 76, both hemispheres 27.7
1827 Male, age 72, unknown 26.0
2411 Female, age 72, unknown 25.6
2828 Female, age 72, unknown 24.2
1870 Female, age 42, unknown 23.6
2666 Male, age 74, left hemisphere 23.0
2586 Male, age 75, left hemisphere 22.6
2019 Male, age 18, unknown 21.6
Dorsal raphe nucleus
nTPM: 25.2
2047 Male, age 72, unknown 28.9
2016 Female, age 72, unknown 24.9
2750 Male, age 76, both hemispheres 24.8
1828 Male, age 53, unknown 23.9
2298 Female, age 72, unknown 23.5
Inferior colliculus
nTPM: 27.0
2849 Male, age 72, unknown 28.1
1848 Female, age 42, unknown 27.5
2097 Female, age 72, unknown 26.7
1890 Male, age 53, unknown 25.7
Median raphe nucleus
nTPM: 26.2
2220 Male, age 76, midline 26.2
Periaquaductal grey, anterior
nTPM: 23.9
1947 Male, age 18, unknown 25.9
2502 Female, age 75, unknown 23.9
1795 Male, age 51, unknown 21.9
Periaquaductal grey, dorsal
nTPM: 27.0
1831 Male, age 72, unknown 30.2
2850 Male, age 76, both hemispheres 27.2
1840 Male, age 53, unknown 25.7
2464 Female, age 72, unknown 24.8
Periaquaductal grey, lateral
nTPM: 27.3
2053 Male, age 18, unknown 30.1
2140 Male, age 76, both hemispheres 26.3
2272 Male, age 74, both hemispheres 25.7
Pretectal area
nTPM: 26.2
2316 Male, age 76, right hemisphere 31.1
2667 Female, age 75, unknown 29.2
2825 Male, age 18, unknown 27.8
2273 Male, age 74, both hemispheres 26.7
2007 Male, age 72, unknown 26.6
2407 Male, age 75, both hemispheres 25.8
1944 Female, age 72, unknown 25.2
1815 Male, age 53, unknown 24.6
2224 Female, age 72, unknown 24.2
1816 Male, age 51, unknown 24.0
1817 Female, age 42, unknown 23.5
Red nucleus
nTPM: 26.4
2823 Male, age 76, right hemisphere 30.1
2588 Male, age 74, left hemisphere 28.4
1954 Female, age 42, unknown 28.2
2503 Female, age 72, unknown 27.3
1865 Male, age 51, unknown 26.7
1904 Male, age 53, unknown 26.7
2725 Female, age 75, unknown 26.4
2227 Male, age 72, unknown 25.4
1821 Female, age 72, unknown 25.0
2785 Male, age 18, unknown 25.0
2584 Male, age 75, left hemisphere 23.7
2769 Male, age 72, unknown 23.5
Substantia nigra
nTPM: 26.0
2409 Female, age 72, unknown 31.2
2699 Male, age 18, unknown 27.6
1941 Male, age 53, unknown 27.3
1889 Female, age 72, unknown 27.0
1851 Male, age 51, unknown 26.3
2583 Male, age 75, right hemisphere 25.4
2665 Male, age 74, both hemispheres 25.4
1916 Female, age 42, unknown 25.1
2590 Female, age 75, unknown 24.4
2241 Male, age 72, unknown 20.4
Superior colliculus
nTPM: 25.1
1913 Female, age 42, unknown 31.3
1895 Male, age 76, right hemisphere 28.2
1839 Male, age 51, unknown 26.0
1995 Male, age 72, unknown 25.7
2587 Male, age 74, left hemisphere 24.7
1796 Male, age 53, unknown 23.6
2668 Female, age 75, unknown 23.6
2664 Male, age 75, both hemispheres 23.1
2261 Male, age 18, unknown 22.5
2087 Female, age 72, unknown 22.2
Ventral tegmental area
nTPM: 25.6
2223 Female, age 72, unknown 28.0
2218 Male, age 76, both hemispheres 27.7
2021 Male, age 53, unknown 26.3
1942 Male, age 51, unknown 25.1
2410 Female, age 72, unknown 24.1
1915 Female, age 42, unknown 22.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.0
Samples: 139

Max nTPM: 13.7
Min nTPM: 5.4
Std nTPM: 1.3
Median nTPM: 8.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 13.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 13.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 12.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 11.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 11.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 11.4
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 11.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 11.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 11.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 11.0
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 11.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.4
FF:10158-103A5 76 years, female 29.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.8
Samples: 4

Max nTPM: 28.1
Min nTPM: 21.0
Sample A Female 21.0
Sample B Female 25.9
Sample C Male 24.0
Sample D Male 28.1
Midbrain
nTPM: 24.7
Samples: 4

Max nTPM: 27.8
Min nTPM: 22.3
Sample A Female 22.3
Sample B Female 27.8
Sample C Male 23.4
Sample D Male 25.2
Periaqueductal gray
nTPM: 26.2
Samples: 3

Max nTPM: 27.6
Min nTPM: 24.5
Sample B Female 27.6
Sample C Male 24.5
Sample D Male 26.5
Superior colliculi
nTPM: 24.2
Samples: 4

Max nTPM: 25.4
Min nTPM: 21.6
Sample A Female 21.6
Sample B Female 24.4
Sample C Male 25.2
Sample D Male 25.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.3
Samples: 4

Max nTPM: 10.0
Min nTPM: 8.7
Sample A Male 9.1
Sample B Male 10.0
Sample C Female 9.4
Sample D Female 8.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69289393 Antisense, RP_050407_03_B04, Mouse strain C57BL/6J (56 days, male) 0.1

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