MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.2 nTPM
HPA Brain:52.6 nTPM
GTEx:30.2 nTPM
FANTOM5:63.1 Scaled Tags Per Million
Pig:45.0 nTPM
Mouse:66.2 nTPM
Allen mouse:6.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.3
1827 Male, age 72, unknown 54.8
2411 Female, age 72, unknown 54.4
2019 Male, age 18, unknown 51.7
1870 Female, age 42, unknown 46.1
2666 Male, age 74, left hemisphere 46.0
1833 Male, age 53, unknown 45.7
2828 Female, age 72, unknown 44.6
2219 Male, age 76, both hemispheres 44.0
1830 Male, age 51, unknown 43.1
2586 Male, age 75, left hemisphere 42.3
Dorsal raphe nucleus
nTPM: 47.8
2750 Male, age 76, both hemispheres 51.7
1828 Male, age 53, unknown 48.8
2298 Female, age 72, unknown 48.4
2047 Male, age 72, unknown 46.8
2016 Female, age 72, unknown 43.2
Inferior colliculus
nTPM: 45.2
2097 Female, age 72, unknown 49.2
1890 Male, age 53, unknown 44.9
1848 Female, age 42, unknown 44.3
2849 Male, age 72, unknown 42.4
Median raphe nucleus
nTPM: 52.6
2220 Male, age 76, midline 52.6
Periaquaductal grey, anterior
nTPM: 49.4
1947 Male, age 18, unknown 53.4
1795 Male, age 51, unknown 48.4
2502 Female, age 75, unknown 46.4
Periaquaductal grey, dorsal
nTPM: 47.1
2850 Male, age 76, both hemispheres 50.1
2464 Female, age 72, unknown 47.7
1840 Male, age 53, unknown 47.1
1831 Male, age 72, unknown 43.3
Periaquaductal grey, lateral
nTPM: 45.6
2140 Male, age 76, both hemispheres 48.8
2272 Male, age 74, both hemispheres 44.5
2053 Male, age 18, unknown 43.5
Pretectal area
nTPM: 51.1
1816 Male, age 51, unknown 63.3
2007 Male, age 72, unknown 61.2
1817 Female, age 42, unknown 56.9
1815 Male, age 53, unknown 55.5
1944 Female, age 72, unknown 54.2
2224 Female, age 72, unknown 47.2
2273 Male, age 74, both hemispheres 47.0
2667 Female, age 75, unknown 46.6
2316 Male, age 76, right hemisphere 45.2
2825 Male, age 18, unknown 43.5
2407 Male, age 75, both hemispheres 41.8
Red nucleus
nTPM: 47.9
2725 Female, age 75, unknown 54.8
1821 Female, age 72, unknown 54.3
2503 Female, age 72, unknown 53.1
2588 Male, age 74, left hemisphere 50.8
2823 Male, age 76, right hemisphere 49.1
1954 Female, age 42, unknown 48.6
1865 Male, age 51, unknown 46.0
2785 Male, age 18, unknown 45.9
1904 Male, age 53, unknown 45.2
2769 Male, age 72, unknown 42.7
2227 Male, age 72, unknown 42.5
2584 Male, age 75, left hemisphere 41.9
Substantia nigra
nTPM: 52.3
1916 Female, age 42, unknown 64.3
2241 Male, age 72, unknown 62.6
1851 Male, age 51, unknown 54.7
1941 Male, age 53, unknown 54.1
1889 Female, age 72, unknown 53.7
2590 Female, age 75, unknown 49.6
2409 Female, age 72, unknown 48.9
2665 Male, age 74, both hemispheres 46.5
2699 Male, age 18, unknown 45.4
2583 Male, age 75, right hemisphere 43.2
Superior colliculus
nTPM: 47.4
2261 Male, age 18, unknown 57.3
2087 Female, age 72, unknown 51.1
1796 Male, age 53, unknown 50.1
2668 Female, age 75, unknown 49.5
1895 Male, age 76, right hemisphere 48.5
2587 Male, age 74, left hemisphere 48.5
1913 Female, age 42, unknown 46.6
1839 Male, age 51, unknown 43.6
1995 Male, age 72, unknown 40.9
2664 Male, age 75, both hemispheres 37.8
Ventral tegmental area
nTPM: 49.7
2410 Female, age 72, unknown 57.2
2218 Male, age 76, both hemispheres 54.3
1915 Female, age 42, unknown 52.2
1942 Male, age 51, unknown 46.8
2223 Female, age 72, unknown 44.4
2021 Male, age 53, unknown 43.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.2
Samples: 139

Max nTPM: 42.0
Min nTPM: 19.6
Std nTPM: 4.6
Median nTPM: 29.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 42.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 41.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 41.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 40.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 40.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 38.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 38.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 38.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 38.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 38.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 37.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 63.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 63.1
FF:10158-103A5 76 years, female 63.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 45.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.7
Samples: 4

Max nTPM: 48.5
Min nTPM: 39.7
Sample A Female 48.5
Sample B Female 39.7
Sample C Male 47.9
Sample D Male 42.5
Midbrain
nTPM: 45.1
Samples: 4

Max nTPM: 53.4
Min nTPM: 38.6
Sample A Female 53.4
Sample B Female 44.3
Sample C Male 43.9
Sample D Male 38.6
Periaqueductal gray
nTPM: 36.9
Samples: 3

Max nTPM: 37.8
Min nTPM: 36.1
Sample B Female 37.8
Sample C Male 36.7
Sample D Male 36.1
Superior colliculi
nTPM: 42.9
Samples: 4

Max nTPM: 45.0
Min nTPM: 39.8
Sample A Female 43.0
Sample B Female 39.8
Sample C Male 45.0
Sample D Male 43.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 66.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 66.2
Samples: 4

Max nTPM: 69.0
Min nTPM: 64.5
Sample A Male 64.5
Sample B Male 65.0
Sample C Female 69.0
Sample D Female 66.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.8
67765720 Antisense, RP_040916_01_F04, Mouse strain C57BL/6J (56 days, male) 6.8

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