MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.5 nTPM
HPA Brain:86.0 nTPM
GTEx:32.5 nTPM
FANTOM5:132.5 Scaled Tags Per Million
Pig:58.4 nTPM
Mouse:36.1 nTPM
Allen mouse:4.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 86.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 77.3
2019 Male, age 18, unknown 83.9
1830 Male, age 51, unknown 81.1
1870 Female, age 42, unknown 80.8
1833 Male, age 53, unknown 80.2
2411 Female, age 72, unknown 79.3
1827 Male, age 72, unknown 76.8
2219 Male, age 76, both hemispheres 73.7
2828 Female, age 72, unknown 73.7
2586 Male, age 75, left hemisphere 72.5
2666 Male, age 74, left hemisphere 70.6
Dorsal raphe nucleus
nTPM: 76.2
2016 Female, age 72, unknown 82.7
2750 Male, age 76, both hemispheres 78.2
1828 Male, age 53, unknown 75.7
2298 Female, age 72, unknown 73.3
2047 Male, age 72, unknown 70.9
Inferior colliculus
nTPM: 80.8
2849 Male, age 72, unknown 86.8
1890 Male, age 53, unknown 80.3
1848 Female, age 42, unknown 79.2
2097 Female, age 72, unknown 77.1
Median raphe nucleus
nTPM: 72.7
2220 Male, age 76, midline 72.7
Periaquaductal grey, anterior
nTPM: 71.3
2502 Female, age 75, unknown 72.9
1947 Male, age 18, unknown 72.1
1795 Male, age 51, unknown 69.0
Periaquaductal grey, dorsal
nTPM: 86.0
2850 Male, age 76, both hemispheres 95.7
1840 Male, age 53, unknown 86.0
1831 Male, age 72, unknown 83.6
2464 Female, age 72, unknown 78.9
Periaquaductal grey, lateral
nTPM: 78.1
2140 Male, age 76, both hemispheres 88.3
2053 Male, age 18, unknown 75.8
2272 Male, age 74, both hemispheres 70.3
Pretectal area
nTPM: 78.2
1817 Female, age 42, unknown 85.1
2007 Male, age 72, unknown 84.4
1815 Male, age 53, unknown 84.0
1816 Male, age 51, unknown 82.2
1944 Female, age 72, unknown 77.9
2224 Female, age 72, unknown 77.8
2407 Male, age 75, both hemispheres 76.1
2316 Male, age 76, right hemisphere 75.8
2825 Male, age 18, unknown 74.9
2667 Female, age 75, unknown 71.0
2273 Male, age 74, both hemispheres 70.7
Red nucleus
nTPM: 84.2
2503 Female, age 72, unknown 94.1
1865 Male, age 51, unknown 89.7
1821 Female, age 72, unknown 87.7
1904 Male, age 53, unknown 85.1
2588 Male, age 74, left hemisphere 85.1
2785 Male, age 18, unknown 84.6
1954 Female, age 42, unknown 83.3
2823 Male, age 76, right hemisphere 83.0
2227 Male, age 72, unknown 82.2
2769 Male, age 72, unknown 80.7
2725 Female, age 75, unknown 78.9
2584 Male, age 75, left hemisphere 75.8
Substantia nigra
nTPM: 74.9
2590 Female, age 75, unknown 84.8
2583 Male, age 75, right hemisphere 81.8
2409 Female, age 72, unknown 81.6
1889 Female, age 72, unknown 79.1
2699 Male, age 18, unknown 73.4
2665 Male, age 74, both hemispheres 71.7
1941 Male, age 53, unknown 70.5
1851 Male, age 51, unknown 69.4
1916 Female, age 42, unknown 68.8
2241 Male, age 72, unknown 68.0
Superior colliculus
nTPM: 78.0
1995 Male, age 72, unknown 86.7
1913 Female, age 42, unknown 84.4
2587 Male, age 74, left hemisphere 79.6
1895 Male, age 76, right hemisphere 79.1
2668 Female, age 75, unknown 78.5
1839 Male, age 51, unknown 77.7
2261 Male, age 18, unknown 76.5
2087 Female, age 72, unknown 75.5
1796 Male, age 53, unknown 71.9
2664 Male, age 75, both hemispheres 69.9
Ventral tegmental area
nTPM: 73.9
2223 Female, age 72, unknown 79.6
2410 Female, age 72, unknown 77.2
2021 Male, age 53, unknown 75.2
2218 Male, age 76, both hemispheres 73.3
1942 Male, age 51, unknown 69.5
1915 Female, age 42, unknown 68.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.5
Samples: 139

Max nTPM: 65.4
Min nTPM: 16.9
Std nTPM: 9.0
Median nTPM: 31.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 65.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 64.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 54.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 53.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 51.8
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 50.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 49.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 49.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 49.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 48.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 47.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 132.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 132.5
FF:10158-103A5 76 years, female 132.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 58.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 50.3
Samples: 4

Max nTPM: 52.7
Min nTPM: 47.9
Sample A Female 48.8
Sample B Female 47.9
Sample C Male 52.7
Sample D Male 51.6
Midbrain
nTPM: 57.3
Samples: 4

Max nTPM: 60.5
Min nTPM: 56.0
Sample A Female 56.0
Sample B Female 56.3
Sample C Male 60.5
Sample D Male 56.2
Periaqueductal gray
nTPM: 58.4
Samples: 3

Max nTPM: 59.3
Min nTPM: 56.8
Sample B Female 56.8
Sample C Male 59.3
Sample D Male 59.1
Superior colliculi
nTPM: 53.2
Samples: 4

Max nTPM: 61.6
Min nTPM: 47.0
Sample A Female 47.0
Sample B Female 48.5
Sample C Male 61.6
Sample D Male 55.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.1
Samples: 4

Max nTPM: 41.6
Min nTPM: 30.1
Sample A Male 30.1
Sample B Male 37.1
Sample C Female 41.6
Sample D Female 35.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.7
69782850 Antisense, RP_050505_03_H05, Mouse strain C57BL/6J (56 days, male) 4.7

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