MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:643.0 nTPM
HPA Brain:674.0 nTPM
GTEx:643.0 nTPM
FANTOM5:789.5 Scaled Tags Per Million
Pig:253.2 nTPM
Mouse:159.9 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 674.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 527.8
2586 Male, age 75, left hemisphere 720.0
1830 Male, age 51, unknown 636.0
1833 Male, age 53, unknown 625.8
2666 Male, age 74, left hemisphere 611.9
1870 Female, age 42, unknown 516.6
2411 Female, age 72, unknown 486.6
2828 Female, age 72, unknown 481.9
2019 Male, age 18, unknown 463.7
2219 Male, age 76, both hemispheres 408.5
1827 Male, age 72, unknown 326.9
Dorsal raphe nucleus
nTPM: 318.6
2750 Male, age 76, both hemispheres 461.8
2016 Female, age 72, unknown 385.5
1828 Male, age 53, unknown 354.1
2047 Male, age 72, unknown 233.2
2298 Female, age 72, unknown 158.5
Inferior colliculus
nTPM: 317.6
2849 Male, age 72, unknown 392.6
1890 Male, age 53, unknown 347.4
1848 Female, age 42, unknown 337.9
2097 Female, age 72, unknown 192.6
Median raphe nucleus
nTPM: 316.9
2220 Male, age 76, midline 316.9
Periaquaductal grey, anterior
nTPM: 293.4
2502 Female, age 75, unknown 340.8
1947 Male, age 18, unknown 299.5
1795 Male, age 51, unknown 239.9
Periaquaductal grey, dorsal
nTPM: 274.9
2464 Female, age 72, unknown 364.6
2850 Male, age 76, both hemispheres 296.0
1831 Male, age 72, unknown 271.6
1840 Male, age 53, unknown 167.5
Periaquaductal grey, lateral
nTPM: 284.7
2053 Male, age 18, unknown 320.6
2140 Male, age 76, both hemispheres 268.8
2272 Male, age 74, both hemispheres 264.8
Pretectal area
nTPM: 284.3
1815 Male, age 53, unknown 438.6
2407 Male, age 75, both hemispheres 371.2
1817 Female, age 42, unknown 348.8
2825 Male, age 18, unknown 344.1
2007 Male, age 72, unknown 315.1
2316 Male, age 76, right hemisphere 306.4
2224 Female, age 72, unknown 209.2
2667 Female, age 75, unknown 207.8
1816 Male, age 51, unknown 204.2
1944 Female, age 72, unknown 194.2
2273 Male, age 74, both hemispheres 187.6
Red nucleus
nTPM: 674.0
2588 Male, age 74, left hemisphere 894.1
1865 Male, age 51, unknown 810.8
2503 Female, age 72, unknown 768.1
2769 Male, age 72, unknown 744.7
2227 Male, age 72, unknown 731.8
1904 Male, age 53, unknown 723.8
1821 Female, age 72, unknown 601.3
1954 Female, age 42, unknown 599.0
2785 Male, age 18, unknown 592.3
2823 Male, age 76, right hemisphere 573.5
2584 Male, age 75, left hemisphere 571.5
2725 Female, age 75, unknown 477.1
Substantia nigra
nTPM: 375.9
2665 Male, age 74, both hemispheres 503.2
2699 Male, age 18, unknown 466.0
2583 Male, age 75, right hemisphere 460.8
2590 Female, age 75, unknown 416.2
1851 Male, age 51, unknown 363.6
2409 Female, age 72, unknown 359.2
1889 Female, age 72, unknown 344.4
1941 Male, age 53, unknown 296.2
2241 Male, age 72, unknown 274.8
1916 Female, age 42, unknown 274.2
Superior colliculus
nTPM: 390.6
1995 Male, age 72, unknown 537.4
2668 Female, age 75, unknown 514.7
1913 Female, age 42, unknown 491.7
1839 Male, age 51, unknown 450.9
2587 Male, age 74, left hemisphere 445.1
2664 Male, age 75, both hemispheres 386.4
1895 Male, age 76, right hemisphere 304.0
1796 Male, age 53, unknown 284.4
2261 Male, age 18, unknown 250.3
2087 Female, age 72, unknown 241.2
Ventral tegmental area
nTPM: 388.1
2223 Female, age 72, unknown 564.9
2410 Female, age 72, unknown 434.2
2021 Male, age 53, unknown 341.4
1942 Male, age 51, unknown 341.3
2218 Male, age 76, both hemispheres 336.3
1915 Female, age 42, unknown 310.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 643.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 643.0
Samples: 139

Max nTPM: 1907.2
Min nTPM: 104.9
Std nTPM: 411.4
Median nTPM: 533.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1907.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1898.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1793.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1746.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1682.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 1643.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 1613.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1582.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1579.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 1520.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 1457.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 789.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 789.5
FF:10158-103A5 76 years, female 789.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 253.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 227.4
Samples: 4

Max nTPM: 374.7
Min nTPM: 139.3
Sample A Female 219.1
Sample B Female 139.3
Sample C Male 176.6
Sample D Male 374.7
Midbrain
nTPM: 253.2
Samples: 4

Max nTPM: 476.5
Min nTPM: 127.2
Sample A Female 476.5
Sample B Female 263.9
Sample C Male 145.2
Sample D Male 127.2
Periaqueductal gray
nTPM: 158.1
Samples: 3

Max nTPM: 194.3
Min nTPM: 124.7
Sample B Female 194.3
Sample C Male 124.7
Sample D Male 155.2
Superior colliculi
nTPM: 200.3
Samples: 4

Max nTPM: 255.6
Min nTPM: 120.5
Sample A Female 210.6
Sample B Female 120.5
Sample C Male 214.3
Sample D Male 255.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 159.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 159.9
Samples: 4

Max nTPM: 174.3
Min nTPM: 146.4
Sample A Male 154.2
Sample B Male 146.4
Sample C Female 164.6
Sample D Female 174.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
70192081 Antisense, RP_050517_01_C01, Mouse strain C57BL/6J (56 days, male) 0.4

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