MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.4 nTPM
HPA Brain:15.0 nTPM
GTEx:9.4 nTPM
FANTOM5:41.6 Scaled Tags Per Million
Pig:27.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.0
2586 Male, age 75, left hemisphere 18.7
1830 Male, age 51, unknown 15.8
2411 Female, age 72, unknown 15.5
2219 Male, age 76, both hemispheres 15.4
2019 Male, age 18, unknown 15.1
1833 Male, age 53, unknown 14.7
1870 Female, age 42, unknown 14.1
1827 Male, age 72, unknown 14.0
2828 Female, age 72, unknown 13.7
2666 Male, age 74, left hemisphere 13.3
Dorsal raphe nucleus
nTPM: 12.9
2750 Male, age 76, both hemispheres 14.0
1828 Male, age 53, unknown 13.6
2047 Male, age 72, unknown 13.2
2016 Female, age 72, unknown 12.6
2298 Female, age 72, unknown 11.0
Inferior colliculus
nTPM: 14.2
1848 Female, age 42, unknown 14.7
1890 Male, age 53, unknown 14.4
2849 Male, age 72, unknown 14.2
2097 Female, age 72, unknown 13.5
Median raphe nucleus
nTPM: 13.3
2220 Male, age 76, midline 13.3
Periaquaductal grey, anterior
nTPM: 14.6
2502 Female, age 75, unknown 16.5
1947 Male, age 18, unknown 14.7
1795 Male, age 51, unknown 12.7
Periaquaductal grey, dorsal
nTPM: 13.1
2464 Female, age 72, unknown 14.7
1840 Male, age 53, unknown 13.7
1831 Male, age 72, unknown 12.6
2850 Male, age 76, both hemispheres 11.3
Periaquaductal grey, lateral
nTPM: 13.2
2053 Male, age 18, unknown 14.3
2140 Male, age 76, both hemispheres 13.5
2272 Male, age 74, both hemispheres 11.8
Pretectal area
nTPM: 13.1
2407 Male, age 75, both hemispheres 15.4
2316 Male, age 76, right hemisphere 14.0
2273 Male, age 74, both hemispheres 13.9
2825 Male, age 18, unknown 13.7
1815 Male, age 53, unknown 13.5
1817 Female, age 42, unknown 13.4
2007 Male, age 72, unknown 12.8
1944 Female, age 72, unknown 12.6
2224 Female, age 72, unknown 12.1
1816 Male, age 51, unknown 11.8
2667 Female, age 75, unknown 11.2
Red nucleus
nTPM: 15.0
1865 Male, age 51, unknown 16.5
2785 Male, age 18, unknown 16.1
2823 Male, age 76, right hemisphere 15.7
2769 Male, age 72, unknown 15.5
1954 Female, age 42, unknown 15.0
2227 Male, age 72, unknown 15.0
2503 Female, age 72, unknown 14.9
2584 Male, age 75, left hemisphere 14.9
1821 Female, age 72, unknown 14.7
2588 Male, age 74, left hemisphere 14.5
1904 Male, age 53, unknown 14.3
2725 Female, age 75, unknown 13.2
Substantia nigra
nTPM: 14.3
2241 Male, age 72, unknown 15.7
2409 Female, age 72, unknown 15.4
1851 Male, age 51, unknown 14.7
2665 Male, age 74, both hemispheres 14.7
2583 Male, age 75, right hemisphere 14.5
1941 Male, age 53, unknown 14.1
2590 Female, age 75, unknown 14.0
1916 Female, age 42, unknown 13.8
2699 Male, age 18, unknown 13.6
1889 Female, age 72, unknown 12.9
Superior colliculus
nTPM: 14.2
2664 Male, age 75, both hemispheres 17.5
2668 Female, age 75, unknown 16.8
1839 Male, age 51, unknown 15.7
1895 Male, age 76, right hemisphere 14.7
1995 Male, age 72, unknown 13.7
1913 Female, age 42, unknown 13.6
1796 Male, age 53, unknown 12.7
2087 Female, age 72, unknown 12.7
2587 Male, age 74, left hemisphere 12.6
2261 Male, age 18, unknown 12.0
Ventral tegmental area
nTPM: 13.1
2410 Female, age 72, unknown 13.8
2223 Female, age 72, unknown 13.5
2021 Male, age 53, unknown 13.4
1915 Female, age 42, unknown 12.9
2218 Male, age 76, both hemispheres 12.6
1942 Male, age 51, unknown 12.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.4
Samples: 139

Max nTPM: 16.6
Min nTPM: 4.6
Std nTPM: 2.1
Median nTPM: 9.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 16.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 16.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 14.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 14.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 13.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 13.6
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 13.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 13.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 12.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 12.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 12.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.6
FF:10158-103A5 76 years, female 41.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.0
Samples: 4

Max nTPM: 27.5
Min nTPM: 18.6
Sample A Female 18.6
Sample B Female 27.5
Sample C Male 24.2
Sample D Male 25.8
Midbrain
nTPM: 24.3
Samples: 4

Max nTPM: 27.3
Min nTPM: 20.9
Sample A Female 20.9
Sample B Female 27.3
Sample C Male 24.7
Sample D Male 24.3
Periaqueductal gray
nTPM: 27.0
Samples: 3

Max nTPM: 28.2
Min nTPM: 25.0
Sample B Female 27.9
Sample C Male 28.2
Sample D Male 25.0
Superior colliculi
nTPM: 23.8
Samples: 4

Max nTPM: 28.7
Min nTPM: 17.7
Sample A Female 24.3
Sample B Female 17.7
Sample C Male 28.7
Sample D Male 24.6

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