MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.6 nTPM
HPA Brain:97.8 nTPM
GTEx:4.6 nTPM
FANTOM5:2.1 Scaled Tags Per Million
Pig:82.1 nTPM
Mouse:33.5 nTPM
Allen mouse:2.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 97.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 68.6
2219 Male, age 76, both hemispheres 210.0
2586 Male, age 75, left hemisphere 65.9
1827 Male, age 72, unknown 63.8
2666 Male, age 74, left hemisphere 58.1
2828 Female, age 72, unknown 55.5
1870 Female, age 42, unknown 51.2
2019 Male, age 18, unknown 49.9
1833 Male, age 53, unknown 49.5
2411 Female, age 72, unknown 44.0
1830 Male, age 51, unknown 38.2
Dorsal raphe nucleus
nTPM: 44.0
1828 Male, age 53, unknown 49.5
2298 Female, age 72, unknown 45.9
2750 Male, age 76, both hemispheres 42.6
2047 Male, age 72, unknown 42.3
2016 Female, age 72, unknown 39.8
Inferior colliculus
nTPM: 93.8
1890 Male, age 53, unknown 126.8
2097 Female, age 72, unknown 121.0
2849 Male, age 72, unknown 70.8
1848 Female, age 42, unknown 56.8
Median raphe nucleus
nTPM: 49.3
2220 Male, age 76, midline 49.3
Periaquaductal grey, anterior
nTPM: 51.1
1795 Male, age 51, unknown 56.0
2502 Female, age 75, unknown 54.6
1947 Male, age 18, unknown 42.8
Periaquaductal grey, dorsal
nTPM: 59.9
1831 Male, age 72, unknown 70.0
1840 Male, age 53, unknown 67.7
2464 Female, age 72, unknown 55.9
2850 Male, age 76, both hemispheres 45.7
Periaquaductal grey, lateral
nTPM: 40.7
2053 Male, age 18, unknown 50.2
2140 Male, age 76, both hemispheres 46.7
2272 Male, age 74, both hemispheres 25.3
Pretectal area
nTPM: 73.1
1944 Female, age 72, unknown 118.3
1816 Male, age 51, unknown 111.1
1817 Female, age 42, unknown 94.7
1815 Male, age 53, unknown 90.3
2007 Male, age 72, unknown 90.2
2667 Female, age 75, unknown 77.0
2224 Female, age 72, unknown 57.0
2407 Male, age 75, both hemispheres 52.1
2825 Male, age 18, unknown 44.5
2316 Male, age 76, right hemisphere 43.7
2273 Male, age 74, both hemispheres 25.2
Red nucleus
nTPM: 36.3
2584 Male, age 75, left hemisphere 54.1
2785 Male, age 18, unknown 50.1
2725 Female, age 75, unknown 45.6
2503 Female, age 72, unknown 40.4
1821 Female, age 72, unknown 37.6
2823 Male, age 76, right hemisphere 36.2
2588 Male, age 74, left hemisphere 33.6
2769 Male, age 72, unknown 31.8
2227 Male, age 72, unknown 29.0
1865 Male, age 51, unknown 27.9
1954 Female, age 42, unknown 25.6
1904 Male, age 53, unknown 24.3
Substantia nigra
nTPM: 97.8
1916 Female, age 42, unknown 136.1
1851 Male, age 51, unknown 127.7
2665 Male, age 74, both hemispheres 123.0
2699 Male, age 18, unknown 110.2
2409 Female, age 72, unknown 108.9
2241 Male, age 72, unknown 105.9
1941 Male, age 53, unknown 88.4
1889 Female, age 72, unknown 85.7
2583 Male, age 75, right hemisphere 53.5
2590 Female, age 75, unknown 39.1
Superior colliculus
nTPM: 66.3
2087 Female, age 72, unknown 96.4
2668 Female, age 75, unknown 94.3
1796 Male, age 53, unknown 68.7
1913 Female, age 42, unknown 68.2
1895 Male, age 76, right hemisphere 64.6
2261 Male, age 18, unknown 62.9
2587 Male, age 74, left hemisphere 62.5
1995 Male, age 72, unknown 57.1
1839 Male, age 51, unknown 50.1
2664 Male, age 75, both hemispheres 38.6
Ventral tegmental area
nTPM: 71.8
1915 Female, age 42, unknown 103.7
2218 Male, age 76, both hemispheres 81.5
2410 Female, age 72, unknown 76.8
1942 Male, age 51, unknown 68.7
2223 Female, age 72, unknown 53.5
2021 Male, age 53, unknown 47.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.6
Samples: 139

Max nTPM: 20.4
Min nTPM: 0.4
Std nTPM: 3.9
Median nTPM: 3.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 20.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 18.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 17.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 15.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 14.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 13.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 13.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 12.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 11.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 11.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 10.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.1
FF:10158-103A5 76 years, female 2.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 82.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 59.6
Samples: 4

Max nTPM: 76.7
Min nTPM: 47.4
Sample A Female 76.7
Sample B Female 49.4
Sample C Male 64.8
Sample D Male 47.4
Midbrain
nTPM: 82.1
Samples: 4

Max nTPM: 104.5
Min nTPM: 66.0
Sample A Female 88.5
Sample B Female 66.0
Sample C Male 104.5
Sample D Male 69.2
Periaqueductal gray
nTPM: 42.9
Samples: 3

Max nTPM: 48.6
Min nTPM: 36.1
Sample B Female 48.6
Sample C Male 43.9
Sample D Male 36.1
Superior colliculi
nTPM: 82.1
Samples: 4

Max nTPM: 111.0
Min nTPM: 58.3
Sample A Female 88.2
Sample B Female 58.3
Sample C Male 111.0
Sample D Male 70.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.5
Samples: 4

Max nTPM: 36.0
Min nTPM: 30.3
Sample A Male 30.3
Sample B Male 33.8
Sample C Female 36.0
Sample D Female 34.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
69013774 Antisense, RP_050310_01_A01, Mouse strain C57BL/6J (56 days, male) 3.7
73514899 Antisense, RP_051121_03_D01, Mouse strain C57BL/6J (56 days, male) 0.8

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