MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.7 nTPM
HPA Brain:53.2 nTPM
GTEx:20.7 nTPM
FANTOM5:131.4 Scaled Tags Per Million
Pig:134.2 nTPM
Mouse:102.4 nTPM
Allen mouse:7.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.5
2411 Female, age 72, unknown 46.7
1870 Female, age 42, unknown 45.1
1827 Male, age 72, unknown 43.7
2828 Female, age 72, unknown 42.1
1833 Male, age 53, unknown 41.8
1830 Male, age 51, unknown 38.9
2219 Male, age 76, both hemispheres 38.6
2666 Male, age 74, left hemisphere 38.3
2019 Male, age 18, unknown 32.9
2586 Male, age 75, left hemisphere 26.7
Dorsal raphe nucleus
nTPM: 39.6
2750 Male, age 76, both hemispheres 44.0
2298 Female, age 72, unknown 42.5
2016 Female, age 72, unknown 38.9
1828 Male, age 53, unknown 36.5
2047 Male, age 72, unknown 36.4
Inferior colliculus
nTPM: 33.7
2097 Female, age 72, unknown 36.8
1890 Male, age 53, unknown 34.0
2849 Male, age 72, unknown 32.9
1848 Female, age 42, unknown 31.3
Median raphe nucleus
nTPM: 48.0
2220 Male, age 76, midline 48.0
Periaquaductal grey, anterior
nTPM: 39.1
1947 Male, age 18, unknown 43.7
1795 Male, age 51, unknown 38.9
2502 Female, age 75, unknown 34.7
Periaquaductal grey, dorsal
nTPM: 39.4
1831 Male, age 72, unknown 44.5
1840 Male, age 53, unknown 39.8
2850 Male, age 76, both hemispheres 37.9
2464 Female, age 72, unknown 35.5
Periaquaductal grey, lateral
nTPM: 37.4
2053 Male, age 18, unknown 41.4
2272 Male, age 74, both hemispheres 37.7
2140 Male, age 76, both hemispheres 33.1
Pretectal area
nTPM: 40.5
2224 Female, age 72, unknown 44.5
1816 Male, age 51, unknown 42.3
2273 Male, age 74, both hemispheres 41.9
2316 Male, age 76, right hemisphere 41.4
1944 Female, age 72, unknown 41.3
2825 Male, age 18, unknown 41.2
2667 Female, age 75, unknown 40.7
1815 Male, age 53, unknown 40.1
2407 Male, age 75, both hemispheres 40.1
2007 Male, age 72, unknown 37.0
1817 Female, age 42, unknown 35.4
Red nucleus
nTPM: 42.2
1821 Female, age 72, unknown 53.9
2725 Female, age 75, unknown 49.3
1904 Male, age 53, unknown 46.7
1865 Male, age 51, unknown 42.5
2769 Male, age 72, unknown 41.7
2823 Male, age 76, right hemisphere 40.9
2584 Male, age 75, left hemisphere 40.4
1954 Female, age 42, unknown 39.9
2227 Male, age 72, unknown 39.5
2503 Female, age 72, unknown 39.5
2588 Male, age 74, left hemisphere 37.6
2785 Male, age 18, unknown 34.8
Substantia nigra
nTPM: 53.2
1916 Female, age 42, unknown 73.8
2699 Male, age 18, unknown 60.2
1851 Male, age 51, unknown 58.1
2241 Male, age 72, unknown 55.5
1941 Male, age 53, unknown 50.8
1889 Female, age 72, unknown 50.6
2409 Female, age 72, unknown 49.0
2665 Male, age 74, both hemispheres 46.2
2590 Female, age 75, unknown 44.3
2583 Male, age 75, right hemisphere 43.2
Superior colliculus
nTPM: 39.5
2587 Male, age 74, left hemisphere 47.6
1913 Female, age 42, unknown 44.5
2668 Female, age 75, unknown 44.2
1796 Male, age 53, unknown 41.9
2261 Male, age 18, unknown 38.5
1839 Male, age 51, unknown 38.4
1995 Male, age 72, unknown 38.1
1895 Male, age 76, right hemisphere 36.6
2087 Female, age 72, unknown 34.8
2664 Male, age 75, both hemispheres 30.7
Ventral tegmental area
nTPM: 48.0
2218 Male, age 76, both hemispheres 55.3
1915 Female, age 42, unknown 54.6
2410 Female, age 72, unknown 50.0
2223 Female, age 72, unknown 45.1
1942 Male, age 51, unknown 41.7
2021 Male, age 53, unknown 41.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.7
Samples: 139

Max nTPM: 42.7
Min nTPM: 6.0
Std nTPM: 6.2
Median nTPM: 19.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 42.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 36.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 36.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 34.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 34.8
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 34.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 32.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 30.8
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 30.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 30.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 30.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 131.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 131.4
FF:10158-103A5 76 years, female 131.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 134.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 134.2
Samples: 4

Max nTPM: 175.7
Min nTPM: 93.0
Sample A Female 175.7
Sample B Female 116.7
Sample C Male 151.5
Sample D Male 93.0
Midbrain
nTPM: 125.0
Samples: 4

Max nTPM: 136.7
Min nTPM: 111.2
Sample A Female 130.9
Sample B Female 136.7
Sample C Male 121.1
Sample D Male 111.2
Periaqueductal gray
nTPM: 119.5
Samples: 3

Max nTPM: 142.8
Min nTPM: 106.7
Sample B Female 106.7
Sample C Male 142.8
Sample D Male 108.9
Superior colliculi
nTPM: 107.2
Samples: 4

Max nTPM: 117.7
Min nTPM: 95.4
Sample A Female 117.7
Sample B Female 95.4
Sample C Male 106.7
Sample D Male 109.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 102.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 102.5
Samples: 4

Max nTPM: 103.9
Min nTPM: 101.6
Sample A Male 101.6
Sample B Male 102.2
Sample C Female 102.1
Sample D Female 103.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.8
69887415 Antisense, RP_050512_03_F07, Mouse strain C57BL/6J (56 days, male) 7.8

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