BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:25.8 nTPM
HPA Brain:56.4 nTPM
GTEx:25.8 nTPM
FANTOM5:27.8 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA042700Antibody HPA044007
Glial cells Not detectedNot detected
Neuronal cells LowNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 56.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 55.1
2289 Male, age 61, right hemisphere 79.0
1854 Male, age 80, left hemisphere 60.4
2846 Female, age 79, unknown 58.6
1857 Female, age 85, left hemisphere 52.1
2290 Female, age 72, unknown 50.7
2288 Male, age 75, left hemisphere 48.8
1781 Male, age 74, unknown 48.3
2481 Female, age 94, left hemisphere 42.6
Globus pallidus, externus
nTPM: 39.3
2567 Female, age 72, unknown 46.4
2395 Male, age 75, both hemispheres 39.8
2646 Male, age 61, right hemisphere 39.1
2772 Female, age 79, unknown 36.2
1996 Male, age 80, right hemisphere 34.8
Globus pallidus, internus
nTPM: 38.6
2566 Female, age 72, unknown 43.9
1818 Male, age 74, unknown 42.3
2111 Female, age 85, right hemisphere 40.5
2483 Female, age 94, right hemisphere 39.8
2037 Male, age 80, right hemisphere 37.6
2778 Female, age 91, both hemispheres 35.0
2287 Male, age 75, right hemisphere 30.9
Nucleus accumbens
nTPM: 56.4
2732 Male, age 80, right hemisphere 74.5
2824 Male, age 61, right hemisphere 73.7
1856 Female, age 91, right hemisphere 63.3
1783 Male, age 74, unknown 58.3
1806 Female, age 85, left hemisphere 47.3
2698 Female, age 72, unknown 47.3
2286 Male, age 75, left hemisphere 45.8
2391 Female, age 94, left hemisphere 41.4
Nucleus basalis of Meynert
nTPM: 46.4
2393 Male, age 80, right hemisphere 56.1
2484 Female, age 94, left hemisphere 44.3
2569 Male, age 61, both hemispheres 43.0
2821 Male, age 75, both hemispheres 42.3
Nucleus of the diagonal band
nTPM: 55.6
2029 Male, age 61, right hemisphere 61.6
1979 Male, age 74, unknown 60.2
2195 Female, age 85, both hemispheres 59.7
2775 Male, age 80, right hemisphere 52.8
1812 Female, age 91, both hemispheres 43.7
Putamen
nTPM: 55.6
1838 Male, age 80, right hemisphere 70.1
2466 Female, age 79, unknown 65.6
2489 Female, age 72, unknown 55.6
1937 Female, age 91, right hemisphere 54.1
1829 Male, age 74, unknown 52.2
2647 Male, age 75, left hemisphere 48.6
2482 Female, age 94, left hemisphere 42.9
Septal nuclei
nTPM: 56.4
2009 Female, age 91, both hemispheres 61.5
2199 Male, age 80, right hemisphere 59.3
2629 Female, age 94, right hemisphere 58.8
2059 Female, age 85, both hemispheres 57.5
1960 Male, age 74, unknown 55.9
2394 Male, age 61, left hemisphere 51.2
2031 Female, age 72, unknown 50.6
Stria terminalis, bed nucleus
nTPM: 55.2
2486 Female, age 94, both hemispheres 63.1
2201 Male, age 74, unknown 51.8
1974 Female, age 91, both hemispheres 50.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 25.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 23.3
Samples: 246

Max nTPM: 81.0
Min nTPM: 6.1
Std nTPM: 10.3
Median nTPM: 22.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 81.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 65.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 64.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 59.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 59.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 56.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 52.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 49.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 46.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 44.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 44.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 25.8
Samples: 246

Max nTPM: 78.6
Min nTPM: 3.0
Std nTPM: 10.7
Median nTPM: 26.1
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 78.6
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 65.4
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 56.3
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 53.0
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 52.9
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 48.5
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 48.1
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 45.7
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 45.3
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 42.9
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 42.8
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Brain - Putamen (basal ganglia)
Average nTPM: 17.2
Samples: 205

Max nTPM: 32.7
Min nTPM: 6.4
Std nTPM: 6.0
Median nTPM: 16.5
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 32.7
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 29.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 29.4
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 28.7
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 28.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 28.0
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 27.2
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 27.1
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 27.1
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 27.1
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 27.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 27.8
FF:10164-103B2 76 years, female 27.8
Nucleus accumbens
Scaled Tags Per Million: 20.0
FF:10037-101F1 23-56 years, mixed 20.0
Putamen
Scaled Tags Per Million: 23.4
FF:10176-103C5 60 years, female 23.4
Globus pallidus
Scaled Tags Per Million: 15.4
FF:10161-103A8 76 years, female 16.6
FF:10175-103C4 60 years, female 14.1

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